RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TLDC1Q6P9B6 456 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 CUZD1Q86UP6 607 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 SHKBP1Q8TBC3 707 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 L3HYPDHQ96EM0 354 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 RTKNQ9BST9 563 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 TNFRSF12AQ9NP84 129 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 DNMT3BQ9UBC3 853 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 G3BP2Q9UN86 482 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 UBA6A0AVT1 1052 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 PENKP01210 267 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 PPM1AP35813 382 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 PTDSS1P48651 473 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 ACTR3P61158 418 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 CYP4F8P98187 520 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 BTKQ06187 659 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 GALNT1Q10472 559 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 PDAP1Q13442 181 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 CDH18Q13634 790 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 C6orf163Q5TEZ5 329 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 NXNQ6DKJ4 435 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 GPR65Q8IYL9 337 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 EFHBQ8N7U6 833 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 ACTRT2Q8TDY3 377 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 CATSPER2Q96P56 530 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 YME1L1Q96TA2 773 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 TCF12Q99081 682 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 ZBP1Q9H171 429 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 ARHGAP26Q9UNA1 814 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 MED16Q9Y2X0 877 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 FCF1Q9Y324 198 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 TRIM43BA6NCK2 446 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 GABRR2P28476 465 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 RHOAP61586 193 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 PTPRRQ15256 657 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 ZNF678Q5SXM1 525 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 GAREM2Q75VX8 874 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 TTC30BQ8N4P2 665 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 TRIM43Q96BQ3 446 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 FAM136AQ96C01 138 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 FAR2Q96K12 515 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 FKBPLQ9UIM3 349 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 ASB3Q9Y575 518 aa21.07■□□□□ 0.96
CCDC88B-208ENST00000492980 H3BMM5 538 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 TGM5O43548 720 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 EFCAB14O75071 495 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 CNPP09543 421 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 ACRP10323 421 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 FMO4P31512 558 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 CDKN1CP49918 316 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 SATB1Q01826 763 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 OR4D1Q15615 310 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 SETMARQ53H47 684 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 C1orf146Q5VVC0 180 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 PGM2L1Q6PCE3 622 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 RYBPQ8N488 228 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 DCAF4L2Q8NA75 395 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 BHMTQ93088 406 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 LBHD1Q9BQE6 289 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 BEGAINQ9BUH8 593 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 STOML1Q9UBI4 398 aa21.06■□□□□ 0.96
CCDC88B-208ENST00000492980 FZD6O60353 706 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 CCNT2O60583 730 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 SMIM24O75264 130 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 NDUFS3O75489 264 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 RHOBTB1O94844 696 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 THRAP10827 490 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 ADSLP30566 484 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 MC4RP32245 332 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 CREMQ03060 361 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 PPM1LQ5SGD2 360 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 ATXN7L2Q5T6C5 722 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 SNX32Q86XE0 403 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 TMC8Q8IU68 726 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 DEFB107AQ8IZN7 70 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 HS6ST3Q8IZP7 471 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 TRMOQ9BU70 441 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 STX18Q9P2W9 335 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 FIS1Q9Y3D6 152 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 RGSL1A5PLK6 1076 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 UBFD1O14562 309 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 TBX10O75333 385 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 SKAP2O75563 359 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 FGF18O76093 207 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 SRP72O76094 671 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 MT-CO1P00395 513 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 CA8P35219 290 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 GCKP35557 465 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 CCDC6Q16204 474 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 UNC50Q53HI1 259 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 PSAPL1Q6NUJ1 521 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 PIANPQ8IYJ0 282 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 AFAP1L2Q8N4X5 818 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 TTC16Q8NEE8 873 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 RHEBL1Q8TAI7 183 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 EXT2Q93063 718 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 ZNF333Q96JL9 665 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 MARK4Q96L34 752 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 ZNF570Q96NI8 536 aa21.05■□□□□ 0.96
CCDC88B-208ENST00000492980 ANKRD27Q96NW4 1050 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms