RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 S100A13Q99584 98 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 FAIM2Q9BWQ8 316 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 DNAJC28Q9NX36 388 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 XYLBO75191 536 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 GPR158Q5T848 1215 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 FAM220AQ7Z4H9 259 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 PLD5Q8N7P1 536 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 DCBLD1Q8N8Z6 715 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 NKX2-3Q8TAU0 364 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 SOCS4Q8WXH5 440 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 BCL2L14Q9BZR8 327 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 AGO3Q9H9G7 860 aaKnown RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 TRAV19A0A0A6YYK7 116 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 LRCH4O75427 683 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 CDK9P50750 372 aaKnown RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 TRAP1Q12931 704 aaKnown RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 MADCAM1Q13477 382 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 SIM2Q14190 667 aaPredicted RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 GLYATQ6IB77 296 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 ADGRD1Q6QNK2 874 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 SLC28A2O43868 658 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 KHDRBS3O75525 346 aaKnown RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 CCNYL3P0C7X3 344 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 TLX1P31314 330 aaPredicted RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 JAM2P57087 298 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 RNASE12Q5GAN4 147 aaKnown RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 C12orf56Q8IXR9 622 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 CYP4X1Q8N118 509 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 ADCY4Q8NFM4 1077 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 LPGAT1Q92604 370 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 PPP1R16AQ96I34 528 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 HOPXQ9BPY8 73 aaPredicted RBP17.6■□□□□ 0.41
NPHP4-209ENST00000489180 SSR3Q9UNL2 185 aa17.6■□□□□ 0.41
NPHP4-209ENST00000489180 A0A1W2PQH9 124 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 IPO13O94829 963 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 FTH1P02794 183 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 HIST1H2ABP04908 130 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 FGF1P05230 155 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 NR4A1P22736 598 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 PABPC1LQ4VXU2 614 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 NOMO2Q5JPE7 1267 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 FKBP1CQ5VVH2 108 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 HIST3H2AQ7L7L0 130 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 ZFP28Q8NHY6 868 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 HIST1H2ACQ93077 130 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 ACAT2Q9BWD1 397 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 ZNF490Q9ULM2 529 aaPredicted RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 COL5A2P05997 1499 aaPredicted RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CCL22O00626 93 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TRAFD1O14545 582 aaPredicted RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 HAT1O14929 419 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CXCR2P25025 360 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 STAT5AP42229 794 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 LRRC49Q8IUZ0 686 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 VANGL1Q8TAA9 524 aaPredicted RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 MTFR1LQ9H019 292 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 PSME2Q9UL46 239 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 NCKAP1Q9Y2A7 1128 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 KPNA5O15131 536 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TGDSO95455 350 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CCNE2O96020 404 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 C4BPAP04003 597 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 SLC6A2P23975 617 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 POLR2JP52435 117 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CPSF7Q8N684 471 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 BBIP1A8MTZ0 92 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 PSIP1O75475 530 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TPSB2P20231 275 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 PSMD4P55036 377 aaKnown RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TPSAB1Q15661 275 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CARTPTQ16568 116 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TEX44Q53QW1 395 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 RALGPS1Q5JS13 557 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 LYPLAL1Q5VWZ2 237 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 REP15Q6BDI9 236 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 UBE2R2Q712K3 238 aaPredicted RBP17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TBC1D21Q8IYX1 336 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 GPC2Q8N158 579 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 OR2T34Q8NGX1 318 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 OR2T3Q8NH03 318 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TEX47Q8TBZ9 253 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 TWIST2Q8WVJ9 160 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 DPP7Q9UHL4 492 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 AGLP35573 1532 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CNTNAP1P78357 1384 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 RPTORQ8N122 1335 aa17.59■□□□□ 0.41
NPHP4-209ENST00000489180 CHRNGP07510 517 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 NAA20P61599 178 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 GRM3Q14832 879 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 TOMM20Q15388 145 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 RFWD3Q6PCD5 774 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 R3HCC1LQ7Z5L2 792 aaKnown RBP17.58■□□□□ 0.41
NPHP4-209ENST00000489180 SLC34A3Q8N130 599 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 C7orf26Q96N11 449 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 AARSD1Q9BTE6 412 aaKnown RBP17.58■□□□□ 0.41
NPHP4-209ENST00000489180 PPIEQ9UNP9 301 aaKnown RBP17.58■□□□□ 0.41
NPHP4-209ENST00000489180 MDM4O15151 490 aa17.58■□□□□ 0.41
NPHP4-209ENST00000489180 SHOX2O60902 331 aaPredicted RBP17.58■□□□□ 0.41
NPHP4-209ENST00000489180 ZNHIT3Q15649 155 aaPredicted RBP17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms