RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 NADSYN1Q6IA69 706 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 HMBOX1Q6NT76 420 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 VPS33AQ96AX1 596 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 TMIGD2Q96BF3 282 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 TEX37Q96LM6 180 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 C1orf74Q96LT6 269 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 CDK15Q96Q40 435 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 GPR62Q9BZJ7 368 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 ZYG11BQ9C0D3 744 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 TUBB1Q9H4B7 451 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 SPO11Q9Y5K1 396 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 XIRP2A4UGR9 3374 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 CASP8AP2Q9UKL3 1982 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 OR1I1O60431 355 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 KPNA6O60684 536 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 ADAMTS4O75173 837 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 NCK1P16333 377 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 RPL17P18621 184 aaKnown RBP12.68□□□□□ -0.38
CLIC4-202ENST00000488683 GRIA3P42263 894 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 SGSHP51688 502 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 DIO3P55073 304 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 RFTN1Q14699 578 aaPredicted RBP12.68□□□□□ -0.38
CLIC4-202ENST00000488683 C18orf21Q32NC0 220 aaPredicted RBP12.68□□□□□ -0.38
CLIC4-202ENST00000488683 FUT11Q495W5 492 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 ZNF678Q5SXM1 525 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 RARS2Q5T160 578 aaKnown RBP12.68□□□□□ -0.38
CLIC4-202ENST00000488683 HERC6Q8IVU3 1022 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 LINC01599Q8WXQ3 324 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 FBXO32Q969P5 355 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 BTBD9Q96Q07 612 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 ACOX2Q99424 681 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 C1orf50Q9BV19 199 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 FAM192AQ9GZU8 254 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 TMEM248Q9NWD8 314 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 SLAMF8Q9P0V8 285 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 PCDHB8Q9UN66 801 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 AURKCQ9UQB9 309 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 SCML2Q9UQR0 700 aa12.68□□□□□ -0.38
CLIC4-202ENST00000488683 CDC7O00311 574 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 MTHFD1P11586 935 aaKnown RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 RHOQP17081 205 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 ATP6V1B2P21281 511 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 C6orf10Q5SRN2 563 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 FAM171A1Q5VUB5 890 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 UGT3A1Q6NUS8 523 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 MON1AQ86VX9 555 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 TMEM173Q86WV6 379 aaPredicted RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 IFNL1Q8IU54 200 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SPPL2CQ8IUH8 684 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 NUP93Q8N1F7 819 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 CANT1Q8WVQ1 401 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 RANBP9Q96S59 729 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SOX17Q9H6I2 414 aaPredicted RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SARS2Q9NP81 518 aaKnown RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 NMRK2Q9NPI5 230 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.67□□□□□ -0.382e-6■■■□□ 18.3
CLIC4-202ENST00000488683 FRMPD3Q5JV73 1810 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SEC24DO94855 1032 aaPredicted RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 CDK14O94921 469 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SCNN1BP51168 640 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 KPNA2P52292 529 aaKnown RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 RPS24P62847 133 aaKnown RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SATB1Q01826 763 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 PRKCZQ05513 592 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 ACAP2Q15057 778 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SLC5A9Q2M3M2 681 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 VARS2Q5ST30 1063 aaKnown RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 MAP3K21Q5TCX8 1036 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 LINGO4Q6UY18 593 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 C16orf59Q7L2K0 433 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 TAS1R1Q7RTX1 841 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 CALML6Q8TD86 181 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 C19orf60Q96EN9 201 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 MPP4Q96JB8 637 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 PPP1R2P1Q96PQ5 205 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 CENPKQ9BS16 269 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 UPF3AQ9H1J1 476 aaKnown RBP12.67□□□□□ -0.38
CLIC4-202ENST00000488683 AP4S1Q9Y587 144 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 SLC4A7Q9Y6M7 1214 aa12.67□□□□□ -0.38
CLIC4-202ENST00000488683 PRRC2BQ5JSZ5 2229 aaKnown RBP12.66□□□□□ -0.38
CLIC4-202ENST00000488683 TRIM38O00635 465 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 CD3EAPO15446 510 aaKnown RBP12.66□□□□□ -0.38
CLIC4-202ENST00000488683 GNAO1P09471 354 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 SLC2A3P11169 496 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 GFAPP14136 432 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 CAPN3P20807 821 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 PCSK6P29122 969 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 SLC6A4P31645 630 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 NDST2P52849 883 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 MYLK3Q32MK0 819 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 CTXN3Q4LDR2 81 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 MSANTD2Q6P1R3 559 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 KLC3Q6P597 504 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 PAQR3Q6TCH7 311 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 LRRC49Q8IUZ0 686 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 MARVELD2Q8N4S9 558 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 TET1Q8NFU7 2136 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 UROC1Q96N76 676 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 MFSD1Q9H3U5 465 aa12.66□□□□□ -0.38
CLIC4-202ENST00000488683 MARCH2Q9P0N8 246 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms