RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SPC25Q9HBM1 224 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 TRMT13Q9NUP7 481 aaKnown RBP17.95■□□□□ 0.46
VIM-206ENST00000487938 A0A0J9YYE9 177 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 ZNF839A8K0R7 811 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 H3BMM5 538 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 PIP5K1BO14986 540 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 TIPRLO75663 272 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 PSMC3P17980 439 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 OR1E1P30953 314 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 IKBKEQ14164 716 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 VPS26BQ4G0F5 336 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 SAMD4BQ5PRF9 694 aaKnown RBP17.94■□□□□ 0.46
VIM-206ENST00000487938 C10orf120Q5SQS8 335 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 ZNF598Q86UK7 904 aaKnown RBP17.94■□□□□ 0.46
VIM-206ENST00000487938 IFNL1Q8IU54 200 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 DDIASQ8IXT1 998 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 DCP1BQ8IZD4 617 aaKnown RBP17.94■□□□□ 0.46
VIM-206ENST00000487938 MYO1HQ8N1T3 1032 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 TRPC4APQ8TEL6 797 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 TADA1Q96BN2 335 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 SLC2A11Q9BYW1 496 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 EPB41L1Q9H4G0 881 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 MRGBPQ9NV56 204 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 CNOT11Q9UKZ1 510 aaKnown RBP17.94■□□□□ 0.46
VIM-206ENST00000487938 SLC27A5Q9Y2P5 690 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 RNF11Q9Y3C5 154 aa17.94■□□□□ 0.46
VIM-206ENST00000487938 IGLV3-10A0A075B6K4 115 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 TCRBV3S1A0A5B6 114 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 SLC12A8A0AV02 714 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 ARHGEF37A1IGU5 675 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 RTN3O95197 1032 aaPredicted RBP17.93■□□□□ 0.46
VIM-206ENST00000487938 CYBAP13498 195 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 SLC7A1P30825 629 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 SLC26A3P40879 764 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 GRIA3P42263 894 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 YBX1P67809 324 aaKnown RBP17.93■□□□□ 0.46
VIM-206ENST00000487938 IL10RBQ08334 325 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 SERINC3Q13530 473 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 KCNA10Q16322 511 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 C8orf82Q6P1X6 216 aaPredicted RBP17.93■□□□□ 0.46
VIM-206ENST00000487938 KLHDC10Q6PID8 442 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 RTN4RL1Q86UN2 441 aaPredicted RBP17.93■□□□□ 0.46
VIM-206ENST00000487938 DHFR2Q86XF0 187 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 CFAP52Q8N1V2 620 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 ZFP28Q8NHY6 868 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 TOP1MTQ969P6 601 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 BTN2A3PQ96KV6 586 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 B3GALT6Q96L58 329 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 MAP10Q9P2G4 905 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 CNOT6Q9ULM6 557 aaKnown RBP17.93■□□□□ 0.46
VIM-206ENST00000487938 A0A1B0GTL3 188 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 LINC00032P0C843 101 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 MTHFD2P13995 350 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 CKMT2P17540 419 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 MAP7D1Q3KQU3 841 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 TWIST2Q8WVJ9 160 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 CANT1Q8WVQ1 401 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 TRIB2Q92519 343 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 FATE1Q969F0 183 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 FBXO32Q969P5 355 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 ZFYVE28Q9HCC9 887 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 MARCH2Q9P0N8 246 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 NOD1Q9Y239 953 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 BTRCQ9Y297 605 aa17.93■□□□□ 0.46
VIM-206ENST00000487938 OAZ2O95190 189 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 PENKP01210 267 aaPredicted RBP17.92■□□□□ 0.46
VIM-206ENST00000487938 GFAPP14136 432 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 MRNIPQ6NTE8 343 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 OR4L1Q8NH43 312 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 ZFRQ96KR1 1074 aaKnown RBP17.92■□□□□ 0.46
VIM-206ENST00000487938 C8orf48Q96LL4 319 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 ZNF597Q96LX8 424 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 POLR1EQ9GZS1 481 aaKnown RBP17.92■□□□□ 0.46
VIM-206ENST00000487938 CATSPERZQ9NTU4 200 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 FAM50BQ9Y247 325 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 UBA6A0AVT1 1052 aaPredicted RBP17.92■□□□□ 0.46
VIM-206ENST00000487938 AZIN1O14977 448 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 ZNF37AP17032 561 aaPredicted RBP17.92■□□□□ 0.46
VIM-206ENST00000487938 PBX3P40426 434 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 ACADVLP49748 655 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 NFKB2Q00653 900 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 ECT2LQ008S8 904 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 TAF10Q12962 218 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 CAPRIN1Q14444 709 aaKnown RBP17.92■□□□□ 0.46
VIM-206ENST00000487938 ZNF235Q14590 738 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 PBXIP1Q96AQ6 731 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 TMEM79Q9BSE2 394 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 TRIM8Q9BZR9 551 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 TUBB1Q9H4B7 451 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 EGFL7Q9UHF1 273 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 GABRQQ9UN88 632 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 PCDHB5Q9Y5E4 795 aa17.92■□□□□ 0.46
VIM-206ENST00000487938 A0A0D9SEW6 157 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 DRGXA6NNA5 263 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 NME4O00746 187 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 AKAP10O43572 662 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 RPP40O75818 363 aaKnown RBP17.91■□□□□ 0.46
VIM-206ENST00000487938 CHRM3P20309 590 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 ATP6V1B2P21281 511 aa17.91■□□□□ 0.46
VIM-206ENST00000487938 PAX3P23760 479 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms