RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 FTCDO95954 541 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 IRF1P10914 325 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 BDKRB2P30411 391 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 CORO1AP31146 461 aaKnown RBP3.84□□□□□ -1.79
VPS41-213ENST00000485955 TMPOP42166 694 aaKnown RBP3.84□□□□□ -1.79
VPS41-213ENST00000485955 CCT5P48643 541 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 TUBP50607 506 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 CLCNKAP51800 687 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 VAMP2P63027 116 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 NAE1Q13564 534 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 DHX8Q14562 1220 aaKnown RBP3.84□□□□□ -1.79
VPS41-213ENST00000485955 BAK1Q16611 211 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 KCNT1Q5JUK3 1230 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 PLEKHA7Q6IQ23 1121 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 C1orf87Q8N0U7 546 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 OR13A1Q8NGR1 328 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 LRRC8CQ8TDW0 803 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 NOC3LQ8WTT2 800 aaKnown RBP3.84□□□□□ -1.79
VPS41-213ENST00000485955 PPM1EQ8WY54 764 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 HTRA1Q92743 480 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 RNF125Q96EQ8 232 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 HES6Q96HZ4 224 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 SLC41A2Q96JW4 573 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 CMKLR1Q99788 373 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 FAM110AQ9BQ89 295 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 TRMT61BQ9BVS5 477 aaKnown RBP3.84□□□□□ -1.79
VPS41-213ENST00000485955 PPP1R14DQ9NXH3 145 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 PADI1Q9ULC6 663 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 TBX20Q9UMR3 447 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 CEPT1Q9Y6K0 416 aa3.84□□□□□ -1.79
VPS41-213ENST00000485955 AKR1B15C9JRZ8 316 aaPredicted RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 NCAM2O15394 837 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 CETPP11597 493 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 MYOD1P15172 320 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 MAPK9P45984 424 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 RBM39Q14498 530 aaKnown RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 KRT24Q2M2I5 525 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 ALG11Q2TAA5 492 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 COL28A1Q2UY09 1125 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 GPATCH4Q5T3I0 446 aaKnown RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 METTL2BQ6P1Q9 378 aaKnown RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.83□□□□□ -1.8
VPS41-213ENST00000485955 MAGEC3Q8TD91 643 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 USP13Q92995 863 aaPredicted RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 KIF1BPQ96EK5 621 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 METTL2AQ96IZ6 378 aaKnown RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 UHRF2Q96PU4 802 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 PLEKHA5Q9HAU0 1116 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 KCND2Q9NZV8 630 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 MPP6Q9NZW5 540 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 POU2F3Q9UKI9 436 aa3.83□□□□□ -1.8
VPS41-213ENST00000485955 TTC7AQ9ULT0 858 aaPredicted RBP3.83□□□□□ -1.8
VPS41-213ENST00000485955 CCDC180Q9P1Z9 1646 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 A0A1W2PS18 150 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 LILRA5A6NI73 299 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 TSPAN4O14817 238 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 TNFSF14O43557 240 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 PAK4O96013 591 aaPredicted RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 ATP1A1P05023 1023 aaKnown RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 CFC1BP0CG36 223 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 CFC1P0CG37 223 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 ABCD3P28288 659 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 GLIPR1P48060 266 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 PPM1FP49593 454 aaPredicted RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 RAD23BP54727 409 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 LINC01547P58512 204 aaPredicted RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 ISL1P61371 349 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 PDE1BQ01064 536 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 PTP4A2Q12974 167 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 DMP1Q13316 513 aaPredicted RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 BIRC3Q13489 604 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 FGFBP1Q14512 234 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 MRGPRG-AS1Q2M3A8 158 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 STXBP5Q5T5C0 1151 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 FAM69AQ5T7M9 428 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 IRAK1BP1Q5VVH5 260 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 NAA35Q5VZE5 725 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 GGNBP1Q5YKI7 109 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 ZNF280DQ6N043 979 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 DUS1LQ6P1R4 473 aaKnown RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 KCTD18Q6PI47 426 aaPredicted RBP3.82□□□□□ -1.8
VPS41-213ENST00000485955 SLC46A3Q7Z3Q1 461 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 KCNH5Q8NCM2 988 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 MYRIPQ8NFW9 859 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 HMGCLL1Q8TB92 370 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 RHBDF1Q96CC6 855 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 KLHL29Q96CT2 875 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 CDCA5Q96FF9 252 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 GRAMD2BQ96HH9 432 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 PPP1R13BQ96KQ4 1090 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 SH3GL2Q99962 352 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 SARDHQ9UL12 918 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 ERVK-11Q9UQG0 969 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 NAALADL1Q9UQQ1 740 aa3.82□□□□□ -1.8
VPS41-213ENST00000485955 UTYO14607 1347 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 FAM172BPA6NC97 362 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 GOLGA6L9A6NEM1 432 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 NTN3O00634 580 aaPredicted RBP3.81□□□□□ -1.8
VPS41-213ENST00000485955 SLC22A3O75751 556 aa3.81□□□□□ -1.8
VPS41-213ENST00000485955 F9P00740 461 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms