RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ETV3P41162 512 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CDH6P55285 790 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CDK3Q00526 305 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SQSTM1Q13501 440 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MARC1Q5VT66 337 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FOXR1Q6PIV2 292 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF574Q6ZN55 896 aaPredicted RBP12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 Q6ZVL8 140 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TSPAN33Q86UF1 283 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MAML1Q92585 1016 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FATE1Q969F0 183 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TMEM159Q96B96 161 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NUS1Q96E22 293 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 BTBD6Q96KE9 485 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CCNL2Q96S94 520 aaPredicted RBP12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 STRADBQ9C0K7 418 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 THAP2Q9H0W7 228 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PHPT1Q9NRX4 125 aaPredicted RBP12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 A0A087X0T9 212 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CPP00450 1065 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PRLP01236 227 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 IVLP07476 585 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FAM228BP0C875 321 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CYP2A6P11509 494 aaPredicted RBP12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ETV5P41161 510 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MMP13P45452 471 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MAXP61244 160 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PTSQ03393 145 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF235Q14590 738 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CLPPQ16740 277 aaPredicted RBP12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RFLNAQ6ZTI6 216 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF605Q86T29 641 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HEATR4Q86WZ0 1026 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 DTX1Q86Y01 620 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NAGSQ8N159 534 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 Q8N9G6 341 aaPredicted RBP12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HSPH1Q92598 858 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TSGA13Q96PP4 275 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 DPEP2Q9H4A9 486 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 EPB41L5Q9HCM4 733 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TAAR2Q9P1P5 351 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 IP6K2Q9UHH9 426 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SUFUQ9UMX1 484 aa12.23□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SPTA1P02549 2419 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MYO18BQ8IUG5 2567 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 A0A0U1RQS6 177 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CD48P09326 243 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 AK4P27144 223 aaPredicted RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CD1CP29017 333 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SERPINB6P35237 376 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ADCY8P40145 1251 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 GARSP41250 739 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 GPR3P46089 330 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CTBSQ01459 385 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 GALNT2Q10471 571 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MMRN1Q13201 1228 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 DPYSL3Q14195 570 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LY6DQ14210 128 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PAFAH1B3Q15102 231 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TGIF1Q15583 401 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ATP13A4Q4VNC1 1196 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TAF1BQ53T94 588 aaPredicted RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ARMC12Q5T9G4 340 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 KIAA1614Q5VZ46 1190 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ADAMTSL4Q6UY14 1074 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CCDC81Q6ZN84 652 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RAVER1Q8IY67 606 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ATPAF2Q8N5M1 289 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ARRDC2Q8TBH0 407 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 KIAA1524Q8TCG1 905 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PDCD6IPQ8WUM4 868 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 COX14Q96I36 57 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SMIM14Q96QK8 99 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NUP85Q9BW27 656 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 GSDMCQ9BYG8 508 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ABCG8Q9H221 673 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SEMA6CQ9H3T2 930 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CARS2Q9HA77 564 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 AMACRQ9UHK6 382 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CAPN11Q9UMQ6 739 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LOXL2Q9Y4K0 774 aa12.22□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 A0A0J9YYE9 177 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 B4DGG1 531 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 C9orf172C9J069 976 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MATN3O15232 486 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PPM1DO15297 605 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ECEL1O95672 775 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CPNE6O95741 557 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TRBC1P01850 177 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SERPING1P05155 500 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LIPCP11150 499 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ITIH1P19827 911 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PTMSP20962 102 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CES1P23141 567 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NFKBIAP25963 317 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 POLD2P49005 469 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ARSDP51689 593 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MAZP56270 477 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms