RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 IL9RQ01113 521 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 POU4F1Q01851 419 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 CTBP1Q13363 440 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 ARHGEF7Q14155 803 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TYSND1Q2T9J0 566 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TAF1BQ53T94 588 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-205ENST00000473099 LYPLAL1Q5VWZ2 237 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 CERS6Q6ZMG9 384 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 RALGPS2Q86X27 583 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-205ENST00000473099 DENND6AQ8IWF6 608 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 STK40Q8N2I9 435 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 ANKRD42Q8N9B4 389 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 GRIN3AQ8TCU5 1115 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 VOPP1Q96AW1 172 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TSNARE1Q96NA8 513 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 P2RY13Q9BPV8 354 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TMEM245Q9H330 911 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 SNX15Q9NRS6 342 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 GRID1Q9ULK0 1009 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 SLC30A1Q9Y6M5 507 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 ANKRD12Q6UB98 2062 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 FAM95CA0A1B0GW59 222 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 FOXO6A8MYZ6 492 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 C2CD4DB7Z1M9 353 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 C1QTNF3-AMACRE9PGA6 284 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 GOLGA8RI6L899 631 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 AURKAO14965 403 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ALPIP09923 528 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 COL6A2P12110 1019 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ITGB7P26010 798 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 CRABP2P29373 138 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 VIPR1P32241 457 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 MC4RP32245 332 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 FOXN2P32314 431 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 LSP1P33241 339 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 SPAM1P38567 509 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 NEK3P51956 506 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 STC1P52823 247 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 MPP1Q00013 466 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 PFKPQ01813 784 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 GUCY1A3Q02108 690 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 CACNG1Q06432 222 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ENPP2Q13822 863 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 USP10Q14694 798 aaKnown RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 TERF2Q15554 542 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 DBN1Q16643 649 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ARSIQ5FYB1 569 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 HHATQ5VTY9 493 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 FAM45BPQ6NSW5 357 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ERAP2Q6P179 960 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 KYAT3Q6YP21 454 aaKnown RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ZSWIM9Q86XI8 627 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ST13P5Q8NFI4 369 aaPredicted RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 MDM1Q8TC05 714 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 FAM45AQ8TCE6 357 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 DENND1AQ8TEH3 1009 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 ATXN2LQ8WWM7 1075 aaKnown RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 PPM1EQ8WY54 764 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 RPP25Q9BUL9 199 aaKnown RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 CDH19Q9H159 772 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 FBRSQ9HAH7 460 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 PCMTD2Q9NV79 361 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 TLK1Q9UKI8 766 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 MTO1Q9Y2Z2 717 aaKnown RBP12.81□□□□□ -0.36
VPS13D-205ENST00000473099 COMMD10Q9Y6G5 202 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 REV3LO60673 3130 aa12.81□□□□□ -0.36
VPS13D-205ENST00000473099 RGSL1A5PLK6 1076 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 GOLGA8CPA6NN73 597 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 SPECC1L-ADORA2AF8WAN1 911 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 PSMD11O00231 422 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 BUD23O43709 281 aaKnown RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 NDUFS3O75489 264 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 ASMTLO95671 621 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 S1PR4O95977 384 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 SLC4A1P02730 911 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 STMN1P16949 149 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 ITGALP20701 1170 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 GABRB3P28472 473 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 CTHP32929 405 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 RPA3P35244 121 aaPredicted RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 KPNA2P52292 529 aaKnown RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 CCDC15Q0P6D6 951 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 ELP6Q0PNE2 266 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 MESP2Q0VG99 397 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 SKIV2LQ15477 1246 aaKnown RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 SMAD1Q15797 465 aaKnown RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 CDKN3Q16667 212 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 AAK1Q2M2I8 961 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 PUS10Q3MIT2 529 aaKnown RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 GPR33Q49SQ1 333 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 C9orf64Q5T6V5 341 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 FAM46CQ5VWP2 391 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 CRTC1Q6UUV9 634 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 TRMT11Q7Z4G4 463 aaKnown RBP12.8□□□□□ -0.36
VPS13D-205ENST00000473099 TTC8Q8TAM2 541 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 DTX3LQ8TDB6 740 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 TCP10LQ8TDR4 215 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 HLA-CQ95604 372 aa12.8□□□□□ -0.36
VPS13D-205ENST00000473099 PBXIP1Q96AQ6 731 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms