RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PIAS2O75928 621 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 KRT38O76015 456 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 TJP3O95049 919 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 PCDH8O95206 1070 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 POP4O95707 220 aaKnown RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 PECAM1P16284 738 aaPredicted RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 HSPA9P38646 679 aaKnown RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 MMP13P45452 471 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 RENBPP51606 427 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 ZNF235Q14590 738 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 PDK1Q15118 436 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 RPS6KA1Q15418 735 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 ZNF284Q2VY69 593 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 MARC1Q5VT66 337 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 AADACL2Q6P093 401 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 RBM44Q6ZP01 1051 aaKnown RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 PTRH1Q86Y79 214 aaKnown RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 CCDC13Q8IYE1 715 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 BBS5Q8N3I7 341 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 RYBPQ8N488 228 aaPredicted RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 TEX26Q8N6G2 289 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 TMEM145Q8NBT3 493 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 TSEN2Q8NCE0 465 aaKnown RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 CCNYQ8ND76 341 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 OR6K2Q8NGY2 324 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 MAML1Q92585 1016 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 P3H4Q92791 437 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 RAB7BQ96AH8 199 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 LIN37Q96GY3 246 aaPredicted RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 FEM1CQ96JP0 617 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 EXOC2Q96KP1 924 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 PSKH2Q96QS6 385 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 HERPUD2Q9BSE4 406 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 BRD8Q9H0E9 1235 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 ZDHHC6Q9H6R6 413 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 SAE1Q9UBE0 346 aaPredicted RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 CCDC187A0A096LP49 1063 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 USP27XA6NNY8 438 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 APOC4-APOC2K7ER74 178 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 KRIT1O00522 736 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 SCAMP1O15126 338 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 MUSKO15146 869 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 MATN3O15232 486 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 TCEA3O75764 348 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 APOC2P02655 101 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 ADRB3P13945 408 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 HNRNPA2B1P22626 353 aaKnown RBP11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 SLC5A2P31639 672 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 AKT2P31751 481 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 GKP32189 559 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 RGRP47804 291 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 CSNK1DP48730 415 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 RPS21P63220 83 aaKnown RBP11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 RAD51Q06609 339 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 NSUN2Q08J23 767 aaKnown RBP eCLIP11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 GRM3Q14832 879 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 NOMO1Q15155 1222 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 TGIF1Q15583 401 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 SKIDA1Q1XH10 827 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 MYLK3Q32MK0 819 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 TMEM259Q4ZIN3 620 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 ZNF805Q5CZA5 627 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 SEL1L2Q5TEA6 688 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 KIAA1161Q6NSJ0 714 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 DCP2Q8IU60 420 aaKnown RBP11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 LRRN4Q8WUT4 740 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 VOPP1Q96AW1 172 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 HAUS1Q96CS2 278 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 MGME1Q9BQP7 344 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 TLR10Q9BXR5 811 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 OSBPL1AQ9BXW6 950 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 SLC17A9Q9BYT1 436 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 CPEB1Q9BZB8 566 aaKnown RBP11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 CARD9Q9H257 536 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 ADNPQ9H2P0 1102 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 ZFR2Q9UPR6 939 aaKnown RBP11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 PCDHGA7Q9Y5G6 932 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 FADS3Q9Y5Q0 445 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 HS3ST3A1Q9Y663 406 aa11.96□□□□□ -0.49
SQSTM1-206ENST00000466342 CPED1A4D0V7 1026 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 K7ESM1 405 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 RIOK3O14730 519 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 TSPAN6O43657 245 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 KIF5CO60282 957 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 CCNB1P14635 433 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 MSNP26038 577 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 CASRP41180 1078 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 AP1S1P61966 158 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 IFI35P80217 286 aaPredicted RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 OTUD4Q01804 1114 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 AP1B1Q10567 949 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 SRSF6Q13247 344 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 KLF1Q13351 362 aaPredicted RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 CLCA4Q14CN2 919 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 PRKD1Q15139 912 aaPredicted RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ZNF569Q5MCW4 686 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 CCDC181Q5TID7 509 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ZCCHC8Q6NZY4 707 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 SRLQ86TD4 932 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ZC3H18Q86VM9 953 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms