RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 FZD2Q14332 565 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 LONRF2Q1L5Z9 754 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 ZNF542PQ5EBM4 170 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 FAM182AQ5T1J6 154 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 LRRC69Q6ZNQ3 347 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 PARGQ86W56 976 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 NDUFAF2Q8N183 169 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 ZNF567Q8N184 647 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 FAM181AQ8N9Y4 354 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 DENND6BQ8NEG7 585 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 IMP4Q96G21 291 aaKnown RBP17.76■□□□□ 0.43
COL7A1-205ENST00000465238 APOLD1Q96LR9 279 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 KLF6Q99612 283 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-205ENST00000465238 PCDH12Q9NPG4 1184 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 KCND1Q9NSA2 647 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 PHTF1Q9UMS5 762 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 ITM2BQ9Y287 266 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 PTPRQQ9UMZ3 2332 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 IGLON5A6NGN9 336 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 RRP8O43159 456 aaKnown RBP17.75■□□□□ 0.43
COL7A1-205ENST00000465238 TLX3O43711 291 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-205ENST00000465238 PGLSO95336 258 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 MT-CO3P00414 261 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 GP1BAP07359 652 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 ITIH2P19823 946 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 SKOR1P84550 965 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 ITPRIPL1Q6GPH6 555 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 ZSWIM9Q86XI8 627 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 SNIP1Q8TAD8 396 aaKnown RBP17.75■□□□□ 0.43
COL7A1-205ENST00000465238 SLC35B2Q8TB61 432 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 CXorf40AQ8TE69 158 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 C1orf54Q8WWF1 131 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 RBM15Q96T37 977 aaKnown RBP eCLIP17.75■□□□□ 0.43
COL7A1-205ENST00000465238 DNPEPQ9ULA0 475 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 CSNK1G3Q9Y6M4 447 aa17.75■□□□□ 0.43
COL7A1-205ENST00000465238 BPTFQ12830 3046 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 CFAP69A5D8W1 941 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 K7ESM1 405 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 RIOK3O14730 519 aaKnown RBP17.74■□□□□ 0.43
COL7A1-205ENST00000465238 OPA1O60313 960 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 PRKCGP05129 697 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 MMP2P08253 660 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 NFKB1P19838 968 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 EPHB1P54762 984 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 PDE1CQ14123 709 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-205ENST00000465238 IHHQ14623 411 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 TMEM52BQ4KMG9 183 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 ZCCHC8Q6NZY4 707 aaKnown RBP17.74■□□□□ 0.43
COL7A1-205ENST00000465238 KDM7AQ6ZMT4 941 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 ZNF548Q8NEK5 533 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-205ENST00000465238 ATG4AQ8WYN0 398 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 SPOCK2Q92563 424 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 FGF11Q92914 225 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 OSBPL9Q96SU4 736 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 TDRD1Q9BXT4 1180 aaKnown RBP17.74■□□□□ 0.43
COL7A1-205ENST00000465238 CAAP1Q9H8G2 361 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 PCDH9Q9HC56 1237 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 NCKIPSDQ9NZQ3 722 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 RSPH14Q9UHP6 348 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 GGT7Q9UJ14 662 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 CHKBQ9Y259 395 aa17.74■□□□□ 0.43
COL7A1-205ENST00000465238 SPINT1O43278 529 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 LIASO43766 372 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 FZD6O60353 706 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 BRINP1O60477 761 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 MMP20O60882 483 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 PDHA1P08559 390 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ITPKBP27987 946 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 CD68P34810 354 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ACTN2P35609 894 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 PFN3P60673 137 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 SLC14A2Q15849 920 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 CCNG2Q16589 344 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ANKRD20A2Q5SQ80 823 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ANKRD20A1Q5TYW2 823 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ANKRD20A3Q5VUR7 823 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 CDCP2Q5VXM1 449 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 C17orf53Q8N3J3 647 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-205ENST00000465238 FAM71DQ8N9W8 422 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 SPATA22Q8NHS9 363 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 TRIM44Q96DX7 344 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-205ENST00000465238 CRELD1Q96HD1 420 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 DEPDC7Q96QD5 511 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 FCRL5Q96RD9 977 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 NAP1L3Q99457 506 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-205ENST00000465238 TMEM121Q9BTD3 319 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 WRAP53Q9BUR4 548 aaKnown RBP17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ADGRE3Q9BY15 652 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 HOMER3Q9NSC5 361 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 SNX12Q9UMY4 172 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ZNF148Q9UQR1 794 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 ZKSCAN5Q9Y2L8 839 aa17.73■□□□□ 0.43
COL7A1-205ENST00000465238 LY6G6EA0A0G2JKS1 128 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 C5orf60A6NFR6 353 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 AQP9O43315 295 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 PMPCBO75439 489 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 TM7SF2O76062 418 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 CYP2A6P11509 494 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-205ENST00000465238 JUNDP17535 347 aa17.72■□□□□ 0.43
COL7A1-205ENST00000465238 STIP1P31948 543 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms