RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 AGRPO00253 132 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 FFAR3O14843 346 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 GPR42O15529 346 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 RPL9P32969 192 aaKnown RBP19■□□□□ 0.63
CCDC88B-204ENST00000463837 POLR2JP52435 117 aaKnown RBP19■□□□□ 0.63
CCDC88B-204ENST00000463837 HECTD2Q5U5R9 776 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 SSR3Q9UNL2 185 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 NR2E3Q9Y5X4 410 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 IRGMA1A4Y4 181 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 NOS3P29474 1203 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 RALGDSQ12967 914 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 ACAP2Q15057 778 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 DCAF12L1Q5VU92 463 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 EEF1DP3Q658K8 133 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 KRT74Q7RTS7 529 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 C12orf29Q8N999 325 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 CDCA5Q96FF9 252 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 C1orf21Q9H246 121 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 H6PDO95479 791 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 DARSP14868 501 aaKnown RBP19■□□□□ 0.63
CCDC88B-204ENST00000463837 GNA13Q14344 377 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 VWA5B1Q5TIE3 1220 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 ZNF557Q8N988 423 aaPredicted RBP19■□□□□ 0.63
CCDC88B-204ENST00000463837 ACSS2Q9NR19 701 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 ING4Q9UNL4 249 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 CDH13P55290 713 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 ITGA7Q13683 1181 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 SVOPLQ8N434 492 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 CBR4Q8N4T8 237 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 RTL3Q8N8U3 475 aaKnown RBP19■□□□□ 0.63
CCDC88B-204ENST00000463837 PHF10Q8WUB8 498 aaKnown RBP19■□□□□ 0.63
CCDC88B-204ENST00000463837 BBS4Q96RK4 519 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 ASB8Q9H765 288 aa19■□□□□ 0.63
CCDC88B-204ENST00000463837 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 QSOX1O00391 747 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 HAT1O14929 419 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 MFSD11O43934 449 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 MTHFRP42898 656 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 GBE1Q04446 702 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PAGE2Q7Z2X7 111 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 TRMT11Q7Z4G4 463 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PGLYRP2Q96PD5 576 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 SLC38A2Q96QD8 506 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 KLHL31Q9H511 634 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 TRNAU1APQ9NX07 287 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 COL1A2P08123 1366 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 ADM5C9JUS6 153 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 RFXANKO14593 260 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 TMCC2O75069 709 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 RALGPS1Q5JS13 557 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 FAM171A1Q5VUB5 890 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 METTL3Q86U44 580 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 WDR48Q8TAF3 677 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 LRRC42Q9Y546 428 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PCDHA2Q9Y5H9 948 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 IFT172Q9UG01 1749 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 H0YGN5 161 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 RGS10O43665 173 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 TBX10O75333 385 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PRKAR1AP10644 381 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 DDI2Q5TDH0 399 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 R3HCC1LQ7Z5L2 792 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PHACTR4Q8IZ21 702 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 ZNF781Q8N8C0 355 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 MINDY2Q8NBR6 621 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 RNF208Q9H0X6 261 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 NFS1Q9Y697 457 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 SUV39H1O43463 412 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PPM1JQ5JR12 505 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 BSNDQ8WZ55 320 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 MRPL45Q9BRJ2 306 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 GATA5Q9BWX5 397 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 NIFKQ9BYG3 293 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 PRDM8Q9NQV8 689 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 GIN1Q9NXP7 522 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 SLC7A8Q9UHI5 535 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 VPS51Q9UID3 782 aa18.99■□□□□ 0.63
CCDC88B-204ENST00000463837 CAPGP40121 348 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 EMC10Q5UCC4 262 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 SLC35B2Q8TB61 432 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 TWIST2Q8WVJ9 160 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 NXNL1Q96CM4 212 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 CD320Q9NPF0 282 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 CLDN25C9JDP6 229 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 ATP5C1P36542 298 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 UGT2B15P54855 530 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 PYDC2Q56P42 97 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 GALNT18Q6P9A2 607 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 MACC1Q6ZN28 852 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 ZNF438Q7Z4V0 828 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 NAT8LQ8N9F0 302 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 RAB2BQ8WUD1 216 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 LRTOMTQ8WZ04 291 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 C2orf49Q9BVC5 232 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 M0R2N6 131 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 CCNE2O96020 404 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 CYP4B1P13584 511 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 PEX6Q13608 980 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 RNF19BQ6ZMZ0 732 aa18.98■□□□□ 0.63
CCDC88B-204ENST00000463837 LINGO1Q96FE5 620 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms