RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	MGME1	Q9BQP7	344 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	DHX35	Q9H5Z1	703 aa	Known RBP	11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ETNK2	Q9NVF9	386 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	DONSON	Q9NYP3	566 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	CWC15	Q9P013	229 aa	Known RBP	11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	PDP2	Q9P2J9	529 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	PPIL1	Q9Y3C6	166 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	PLEKHM1	Q9Y4G2	1056 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	PCDHGC4	Q9Y5F7	938 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	LRRK2	Q5S007	2527 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	DOPEY2	Q9Y3R5	2298 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	IGHV1OR21-1	A0A087WYE8	117 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815		A0A0U1RQS6	177 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	STMND1	H3BQB6	276 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	TEX33	O43247	280 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	SOCS5	O75159	536 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	LRCH4	O75427	683 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	IVL	P07476	585 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	LIF	P15018	202 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	TCF4	P15884	667 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	PSMA2	P25787	234 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	IL1R2	P27930	398 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	MIP	P30301	263 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	VIPR1	P32241	457 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	UGT1A3	P35503	534 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	ADCY8	P40145	1251 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	POLD2	P49005	469 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	HCAR3	P49019	387 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	POLR2L	P62875	67 aa	Known RBP	11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	CTBS	Q01459	385 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	DPT	Q07507	201 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	LBR	Q14739	615 aa	Known RBP	11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	NCAPH	Q15003	741 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	ACOX1	Q15067	660 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	AMZ1	Q400G9	498 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	COLEC12	Q5KU26	742 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	TMCO4	Q5TGY1	634 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	NKAIN2	Q5VXU1	208 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	E4F1	Q66K89	784 aa	Predicted RBP	11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	DCUN1D2	Q6PH85	259 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	RFLNA	Q6ZTI6	216 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	TSPAN33	Q86UF1	283 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	PSTK	Q8IV42	348 aa	Known RBP	11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	NEK11	Q8NG66	645 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	OR4D9	Q8NGE8	314 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	FNIP1	Q8TF40	1166 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	JPH3	Q8WXH2	748 aa	Predicted RBP	11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	TAAR9	Q96RI9	348 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	NUDCD1	Q96RS6	583 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	DDA1	Q9BW61	102 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	GSDMC	Q9BYG8	508 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	CDH19	Q9H159	772 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	SLC25A18	Q9H1K4	315 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	SP110	Q9HB58	689 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	NOD2	Q9HC29	1040 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	LMBRD1	Q9NUN5	540 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	SEPT3	Q9UH03	358 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	PCSK1N	Q9UHG2	260 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	B3GALT1	Q9Y5Z6	326 aa		11.14	□□□□□ -0.63
PTPN7-204	ENST00000462815	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	CLEC18A	A5D8T8	446 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	ANKRD62	A6NC57	917 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	PSMD11	O00231	422 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	DFFA	O00273	331 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	PDE2A	O00408	941 aa	Predicted RBP	11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	FZD6	O60353	706 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	MAFK	O60675	156 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	PPFIA2	O75334	1257 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	EML2	O95834	649 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	CP	P00450	1065 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	SFTPC	P11686	197 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	ATP1A3	P13637	1013 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	ALDH4A1	P30038	563 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	GNPDA1	P46926	289 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	ILF3	Q12906	894 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	TRA2A	Q13595	282 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	DPYSL2	Q16555	572 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	SLC30A9	Q6PML9	568 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	CLEC18B	Q6UXF7	455 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815		Q6ZVL8	140 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	CLEC18C	Q8NCF0	446 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	PIH1D2	Q8WWB5	315 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	SCRN2	Q96FV2	425 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	SMIM14	Q96QK8	99 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	ADNP	Q9H2P0	1102 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	PHPT1	Q9NRX4	125 aa	Predicted RBP	11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	SEPT11	Q9NVA2	429 aa	Known RBP	11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	PARVA	Q9NVD7	372 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	OCIAD1	Q9NX40	245 aa		11.13	□□□□□ -0.63
PTPN7-204	ENST00000462815	USP9X	Q93008	2570 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	RHPN2P1	A8MT19	583 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815		B4E171	279 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	PGLS	O95336	258 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	PDHA1	P08559	390 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	FER	P16591	822 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	TSPAN7	P41732	249 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	FASLG	P48023	281 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	RENBP	P51606	427 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	TLE1	Q04724	770 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms