RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 A0A0U1RQS6 177 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 A0A1W2PQ67 120 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 GOLGA6CA6NDK9 693 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 GOLGA6BA6NDN3 693 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 C9orf172C9J069 976 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 FGF1P05230 155 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 GOLGA6DP0CG33 693 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 SKILP12757 684 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 POLD2P49005 469 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 ILF3Q12906 894 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL7A1-204ENST00000462475 LINC00303Q3SY05 128 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 TXNRD3NBQ6F5E7 133 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 RAET1GQ6H3X3 334 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 SLC30A9Q6PML9 568 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 Q6ZVL8 140 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 USP53Q70EK8 1073 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 ZNF438Q7Z4V0 828 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 ATPAF2Q8N5M1 289 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 EXD3Q8N9H8 876 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 PATE1Q8WXA2 126 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 SGF29Q96ES7 293 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 NUDT22Q9BRQ3 303 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 TRNAU1APQ9NX07 287 aaKnown RBP16.08■□□□□ 0.16
COL7A1-204ENST00000462475 GOLGA6AQ9NYA3 693 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 PHTF1Q9UMS5 762 aa16.08■□□□□ 0.16
COL7A1-204ENST00000462475 RHPN2P1A8MT19 583 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 PSMD11O00231 422 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 PGLSO95336 258 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 ECEL1O95672 775 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 CPNE6O95741 557 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 MYBL1P10243 752 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 RARAP10276 462 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 CYP2A6P11509 494 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-204ENST00000462475 CTPS1P17812 591 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 WT1P19544 449 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-204ENST00000462475 ALDH4A1P30038 563 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 MMP13P45452 471 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 NR1D2Q14995 579 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 DOK6Q6PKX4 331 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 RFLNAQ6ZTI6 216 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 PIM3Q86V86 326 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 RCBTB1Q8NDN9 531 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 EXTL1Q92935 676 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 TRIM11Q96F44 468 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 SMIM14Q96QK8 99 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 MCCC1Q96RQ3 725 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-204ENST00000462475 ISCUQ9H1K1 167 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 PCDH18Q9HCL0 1135 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 MRPL47Q9HD33 250 aaKnown RBP16.07■□□□□ 0.16
COL7A1-204ENST00000462475 SLC17A4Q9Y2C5 497 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 PCDHGA4Q9Y5G9 962 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 UNC13CQ8NB66 2214 aa16.07■□□□□ 0.16
COL7A1-204ENST00000462475 A0A1W2PQC6 194 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 SLC28A2O43868 658 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 MBD3O95983 291 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 SOD1P00441 154 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 CCL4P13236 92 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 TEAD1P28347 426 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 ANP32AP39687 249 aaKnown RBP16.06■□□□□ 0.16
COL7A1-204ENST00000462475 CTBSQ01459 385 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 BOLA3Q53S33 107 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 MANEAQ5SRI9 462 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 ARMC12Q5T9G4 340 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 MARC1Q5VT66 337 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 ZNF574Q6ZN55 896 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-204ENST00000462475 USP45Q70EL2 814 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 DTX1Q86Y01 620 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 NAGSQ8N159 534 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 BBS5Q8N3I7 341 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 PMEPA1Q969W9 287 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 SCRN2Q96FV2 425 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 BTBD6Q96KE9 485 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 NAP1L5Q96NT1 182 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-204ENST00000462475 BPIFA3Q9BQP9 254 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 NAT10Q9H0A0 1025 aaKnown RBP16.06■□□□□ 0.16
COL7A1-204ENST00000462475 KCTD5Q9NXV2 234 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 SEPT10Q9P0V9 454 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 TMEM63CQ9P1W3 806 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 CD84Q9UIB8 345 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 PLEKHM1Q9Y4G2 1056 aa16.06■□□□□ 0.16
COL7A1-204ENST00000462475 MYO18BQ8IUG5 2567 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 IGHV5-10-1A0A0J9YXX1 117 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 A0A1B0GTH6 734 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 GOLGA6L22H0YM25 854 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 IVLP07476 585 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 PDHA1P08559 390 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 NFKBIAP25963 317 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 CD1CP29017 333 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 SERPINB6P35237 376 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 ADCY8P40145 1251 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 CDH6P55285 790 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 SLC25A11Q02978 314 aaKnown RBP16.05■□□□□ 0.16
COL7A1-204ENST00000462475 NFATC3Q12968 1075 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 FILIP1LQ4L180 1135 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 RALGPS1Q5JS13 557 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 NKAIN2Q5VXU1 208 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 TECPR1Q7Z6L1 1165 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 TRIM74Q86UV6 250 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 NSMCE1Q8WV22 266 aa16.05■□□□□ 0.16
COL7A1-204ENST00000462475 PIH1D2Q8WWB5 315 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms