RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 C3orf70A6NLC5 250 aaPredicted RBP20.72■□□□□ 0.91
SDC1-205ENST00000447124 PDE2AO00408 941 aaPredicted RBP20.72■□□□□ 0.91
SDC1-205ENST00000447124 MFAP3LO75121 409 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 SOD1P00441 154 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 TRBC1P01850 177 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 HLA-DQB2P05538 268 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 CCNB1P14635 433 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 POLD2P49005 469 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 CDK3Q00526 305 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 ARHGEF7Q14155 803 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 SPACA3Q8IXA5 215 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 CCDC42Q96M95 316 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 SLC46A1Q96NT5 459 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 PHPT1Q9NRX4 125 aaPredicted RBP20.72■□□□□ 0.91
SDC1-205ENST00000447124 SPATS2LQ9NUQ6 558 aaKnown RBP20.72■□□□□ 0.91
SDC1-205ENST00000447124 KCTD5Q9NXV2 234 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 CD84Q9UIB8 345 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 LCMT1Q9UIC8 334 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 ST14Q9Y5Y6 855 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 JCHAINP01591 159 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 CES1P23141 567 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 NFKBIAP25963 317 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 TEAD1P28347 426 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 TLE3Q04726 772 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 DPTQ07507 201 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 TBX2Q13207 712 aaPredicted RBP20.71■□□□□ 0.91
SDC1-205ENST00000447124 SPIDRQ14159 915 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 LRRC66Q68CR7 880 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 USP45Q70EL2 814 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 B3GNT8Q7Z7M8 397 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 PLD5Q8N7P1 536 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 CNTD1Q8N815 330 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 WDR48Q8TAF3 677 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 GPBAR1Q8TDU6 330 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 SCAMP4Q969E2 229 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 HDAC11Q96DB2 347 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 NAF1Q96HR8 494 aaKnown RBP20.71■□□□□ 0.91
SDC1-205ENST00000447124 AGAP2Q99490 1192 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 LGMNQ99538 433 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 TDRD1Q9BXT4 1180 aaKnown RBP20.71■□□□□ 0.91
SDC1-205ENST00000447124 SUDS3Q9H7L9 328 aaPredicted RBP20.71■□□□□ 0.91
SDC1-205ENST00000447124 SYNDIG1Q9H7V2 258 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 CARS2Q9HA77 564 aaKnown RBP20.71■□□□□ 0.91
SDC1-205ENST00000447124 AMACRQ9UHK6 382 aa20.71■□□□□ 0.91
SDC1-205ENST00000447124 MTA2O94776 668 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 MMP2P08253 660 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 MX2P20592 715 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 ERVPABLB-1P60509 514 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 HLTFQ14527 1009 aaKnown RBP eCLIP20.7■□□□□ 0.9
SDC1-205ENST00000447124 TSR1Q2NL82 804 aaKnown RBP20.7■□□□□ 0.9
SDC1-205ENST00000447124 ZFYVE27Q5T4F4 411 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 RAET1GQ6H3X3 334 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 IGF2-ASQ6U949 168 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 CCDC13Q8IYE1 715 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 Q8N9G6 341 aaPredicted RBP20.7■□□□□ 0.9
SDC1-205ENST00000447124 CCNYQ8ND76 341 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 LRRN3Q9H3W5 708 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 DPEP2Q9H4A9 486 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 SUFUQ9UMX1 484 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 SLC17A4Q9Y2C5 497 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 PLEKHM1Q9Y4G2 1056 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 TTLL3Q9Y4R7 772 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 PCDHGA8Q9Y5G5 932 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 RNF215Q9Y6U7 377 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 FASNP49327 2511 aaKnown RBP20.7■□□□□ 0.9
SDC1-205ENST00000447124 BPTFQ12830 3046 aa20.7■□□□□ 0.9
SDC1-205ENST00000447124 LRRD1A4D1F6 860 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 GOLGA6CA6NDK9 693 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 GOLGA6BA6NDN3 693 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 KCNK1O00180 336 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 CLDN7O95471 211 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 FGF1P05230 155 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 RPLP0P05388 317 aaKnown RBP20.69■□□□□ 0.9
SDC1-205ENST00000447124 GOLGA6DP0CG33 693 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 AK4P27144 223 aaPredicted RBP20.69■□□□□ 0.9
SDC1-205ENST00000447124 ARHGAP25P42331 645 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 GPR1P46091 355 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 STC1P52823 247 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 C14orf28Q4W4Y0 310 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 CERCAMQ5T4B2 595 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 NLRP8Q86W28 1048 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 C17orf82Q86X59 251 aaPredicted RBP20.69■□□□□ 0.9
SDC1-205ENST00000447124 NDUFAF2Q8N183 169 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 ZNF248Q8NDW4 579 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 OR6C4Q8NGE1 309 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 GOLGA6AQ9NYA3 693 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 APPL1Q9UKG1 709 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 TMEM98Q9Y2Y6 226 aa20.69■□□□□ 0.9
SDC1-205ENST00000447124 B4DGG1 531 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 GLB1P16278 677 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 GNPDA1P46926 289 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 EPHB1P54762 984 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 PCBP4P57723 403 aaKnown RBP20.68■□□□□ 0.9
SDC1-205ENST00000447124 SKOR1P84550 965 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 PPIDQ08752 370 aaKnown RBP20.68■□□□□ 0.9
SDC1-205ENST00000447124 ZBTB17Q13105 803 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 SLC9A4Q6AI14 798 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 FOXR1Q6PIV2 292 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 NPNTQ6UXI9 565 aa20.68■□□□□ 0.9
SDC1-205ENST00000447124 WDR36Q8NI36 951 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms