RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CNR2P34972 360 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 TMPRSS15P98073 1019 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 RPL6Q02878 288 aaKnown RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 IFFO1Q0D2I5 559 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 CNGA3Q16281 694 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ANKRD20A4Q4UJ75 823 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ZRANB3Q5FWF4 1079 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 SPDYCQ5MJ68 293 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 LYPLAL1Q5VWZ2 237 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ZNF534Q76KX8 674 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 CYP2U1Q7Z449 544 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 LONP2Q86WA8 852 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 CBARPQ8N350 705 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 SNX19Q92543 992 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 SKA1Q96BD8 255 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ULK4Q96C45 1275 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 AP2M1Q96CW1 435 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 C9orf72Q96LT7 481 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 NSMCE3Q96MG7 304 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 FAM167BQ9BTA0 163 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ZSCAN5AQ9BUG6 496 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 SPATA16Q9BXB7 569 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 BPIFA1Q9NP55 256 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 C20orf96Q9NUD7 363 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 POLR3BQ9NW08 1133 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 DLGAP2Q9P1A6 1054 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ZFATQ9P243 1243 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 SPO11Q9Y5K1 396 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 CEP192Q8TEP8 1941 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 A0A1W2PQU0 124 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CCDC78A2IDD5 438 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 PRR33A8MZF0 331 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 LDB2O43679 373 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 FSBPO95073 299 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 ACSL3O95573 720 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 C7P10643 843 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 RALBP11234 206 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 AVPR2P30518 371 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 GPR1P46091 355 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 SPINT3P49223 89 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 STC1P52823 247 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 METAP1P53582 386 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 DCDC1P59894 354 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 PTSQ03393 145 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CBLBQ13191 982 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 IHHQ14623 411 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 LRRC14Q15048 493 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 KLHL38Q2WGJ6 581 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 TMEM31Q5JXX7 168 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 RAET1GQ6H3X3 334 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 KIAA0930Q6ICG6 404 aaPredicted RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 CAPN12Q6ZSI9 719 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CEP68Q76N32 757 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 LPCAT2Q7L5N7 544 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 TAOK1Q7L7X3 1001 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 TAS2R42Q7RTR8 314 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CROCCP2Q86T23 111 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 TMEM135Q86UB9 458 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 TSPAN33Q86UF1 283 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 WDR5BQ86VZ2 330 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 TRIM69Q86WT6 500 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 GSPT2Q8IYD1 628 aaKnown RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 MPP5Q8N3R9 675 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CADM4Q8NFZ8 388 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 GDAP1Q8TB36 358 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 FAM174AQ8TBP5 190 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 HEXDCQ8WVB3 486 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CAVIN3Q969G5 261 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 DNAJC1Q96KC8 554 aaKnown RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 PRRX2Q99811 253 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 GPR174Q9BXC1 333 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 SLC17A9Q9BYT1 436 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 ZCCHC2Q9C0B9 1178 aaKnown RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 ACBD3Q9H3P7 528 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CD248Q9HCU0 757 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 PRMT8Q9NR22 394 aaPredicted RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 CATSPERZQ9NTU4 200 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 WSB2Q9NYS7 404 aaPredicted RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 IL17CQ9P0M4 197 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 CRLS1Q9UJA2 301 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 DMTF1Q9Y222 760 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 ITM2BQ9Y287 266 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.08□□□□□ -0.8
CD44-207ENST00000425428 CACNA1IQ9P0X4 2223 aa10.08□□□□□ -0.8
CD44-207ENST00000425428 LRRK1Q38SD2 2015 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 MYLKQ15746 1914 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 IGLON5A6NGN9 336 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 CFAP99D6REC4 459 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 FPGTO14772 594 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 BUD23O43709 281 aaKnown RBP10.07□□□□□ -0.8
CD44-207ENST00000425428 RECQL5O94762 991 aaPredicted RBP10.07□□□□□ -0.8
CD44-207ENST00000425428 RHOBTB1O94844 696 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 VAPBO95292 243 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 ACSL1P33121 698 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 PXNP49023 591 aaPredicted RBP10.07□□□□□ -0.8
CD44-207ENST00000425428 TTPAP49638 278 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 CCR5P51681 352 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 ZNF140P52738 457 aaPredicted RBP10.07□□□□□ -0.8
CD44-207ENST00000425428 SEMG2Q02383 582 aa10.07□□□□□ -0.8
CD44-207ENST00000425428 CACNG1Q06432 222 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms