RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MS4A13Q5J8X5 152 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 C9orf50Q5SZB4 431 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 GPR158Q5T848 1215 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 SLC8B1Q6J4K2 584 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 PSRC1Q6PGN9 363 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 KIAA0408Q6ZU52 694 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 MON1AQ86VX9 555 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 B4GALNT2Q8NHY0 566 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 BLOC1S5Q8TDH9 187 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 IFT43Q96FT9 208 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 MRPL1Q9BYD6 325 aaKnown RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 CERS4Q9HA82 394 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 MARCH4Q9P2E8 410 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 PSMD13Q9UNM6 376 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 TLR6Q9Y2C9 796 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 ATP6AP2A0A1C7CYW4 349 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 TCAF2A6NFQ2 919 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 AHCYL1O43865 530 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 GPC4O75487 556 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 ATP6AP2O75787 350 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 FESP07332 822 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 ME2P23368 584 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 CLCN5P51795 746 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 CDKN2DP55273 166 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 FOLH1Q04609 750 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 PTK2BQ14289 1009 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 IHHQ14623 411 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 CLEC6AQ6EIG7 209 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 LAYNQ6UX15 382 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 CCDC117Q8IWD4 279 aaPredicted RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 ST13P4Q8IZP2 240 aaPredicted RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 AFAP1L2Q8N4X5 818 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 ZNF461Q8TAF7 563 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 SH3RF2Q8TEC5 729 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 IGSF8Q969P0 613 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 TSPAN17Q96FV3 270 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 C8orf48Q96LL4 319 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 ZNF512Q96ME7 567 aaPredicted RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 RPRD1AQ96P16 312 aaPredicted RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 FBXO44Q9H4M3 255 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 ZDHHC7Q9NXF8 308 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 CCDC167Q9P0B6 97 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 VWA7Q9Y334 891 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 MYLKQ15746 1914 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 TEX28O15482 410 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 SUPT7LO94864 414 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 RHOQP17081 205 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 DNAJB1P25685 340 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 PDAP1Q13442 181 aaKnown RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 PDK3Q15120 406 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 AGKQ53H12 422 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 SIRPB2Q5JXA9 342 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 C10orf120Q5SQS8 335 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 RASIP1Q5U651 963 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 FBXL19Q6PCT2 694 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 SLC30A9Q6PML9 568 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 DDX53Q86TM3 631 aaKnown RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 CILP2Q8IUL8 1156 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 UMODL1-AS1Q8N2C9 162 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 OR52K2Q8NGK3 314 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 GABPB2Q8TAK5 448 aaPredicted RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 DCUN1D1Q96GG9 259 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 RAD9AQ99638 391 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 SLX1AQ9BQ83 275 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 C17orf80Q9BSJ5 609 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 HTATIP2Q9BUP3 242 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 NACA2Q9H009 215 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 EML4Q9HC35 981 aaKnown RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 PAPOLBQ9NRJ5 636 aaKnown RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 SCML2Q9UQR0 700 aa10.68□□□□□ -0.7
CUX1-205ENST00000425244 NYNRINQ9P2P1 1898 aaKnown RBP10.68□□□□□ -0.7
CUX1-205ENST00000425244 UBDO15205 165 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 SLC22A2O15244 555 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 CXCL14O95715 111 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 MMP2P08253 660 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 SLC2A3P11169 496 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 PPM1AP35813 382 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 MAGEA11P43364 429 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 LEPRP48357 1165 aaKnown RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 DNAJB13P59910 316 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 PFKPQ01813 784 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 HERC3Q15034 1050 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 RARS2Q5T160 578 aaKnown RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 PLPP4Q5VZY2 271 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 FBXL22Q6P050 247 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 LRRC49Q8IUZ0 686 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 MFN1Q8IWA4 741 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 RNF168Q8IYW5 571 aaPredicted RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 GALNT4Q8N4A0 578 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 TBATAQ96M53 351 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 SEMA3CQ99985 751 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 TCF25Q9BQ70 676 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 CCSER2Q9H7U1 834 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 RMI1Q9H9A7 625 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 C6orf203Q9P0P8 240 aaPredicted RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 AK5Q9Y6K8 562 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 SLC12A8A0AV02 714 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 SLC38A8A6NNN8 435 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 RAMP2O60895 175 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 ARHGEF15O94989 841 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms