RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 APOC2P02655 101 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 LGALS2P05162 132 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CLCN7P51798 805 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ST3GAL1Q11201 340 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 MAP2K5Q13163 448 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PPP2R2DQ66LE6 453 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SV2AQ7L0J3 742 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 GALNTL5Q7Z4T8 443 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PNPLA2Q96AD5 504 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 HSFY1Q96LI6 401 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 BTBD10Q9BSF8 475 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 DUS2Q9NX74 493 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SEC14L3Q9UDX4 400 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RGS17Q9UGC6 210 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SPEF1Q9Y4P9 236 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TTLL8A6PVC2 850 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ANPEPP15144 967 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ADRA1DP25100 572 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PNLIPRP1P54315 467 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PPP2R2BQ00005 443 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 BEX3Q00994 111 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SPDYCQ5MJ68 293 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CCNYL2Q5T2Q4 361 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CPTPQ5TA50 214 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CHADLQ6NUI6 762 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 DUS1LQ6P1R4 473 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CXCL17Q6UXB2 119 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 DEF8Q6ZN54 512 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PNLDC1Q8NA58 520 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 GDPD5Q8WTR4 605 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TMEM125Q96AQ2 219 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CDCA5Q96FF9 252 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 DHRS1Q96LJ7 313 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RHBDL2Q9NX52 303 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ENO4A6NNW6 628 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF432O94892 652 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 LAMP2P13473 410 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ELK3P41970 407 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ABL2P42684 1182 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 RAB39AQ14964 217 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 RFX4Q33E94 735 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MINDY4Q4G0A6 757 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SLC9B1Q4ZJI4 515 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PDSS1Q5T2R2 415 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 BROXQ5VW32 411 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 FRRS1Q6ZNA5 592 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MAB21L3Q8N8X9 362 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 TAS1R2Q8TE23 839 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GRIP2Q9C0E4 1043 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ZFP14Q9HCL3 533 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CALML5Q9NZT1 146 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 AGO1Q9UL18 857 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 OGDHLQ9ULD0 1010 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SIGLEC16A6NMB1 481 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ERCC1P07992 297 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 NR2C1P13056 603 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF823P16415 610 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CDH3P22223 829 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GABRR2P28476 465 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ADCYAP1R1P41586 468 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PLK1P53350 603 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 BNIP2Q12982 314 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 EIPR1Q53HC9 387 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 BRMS1LQ5PSV4 323 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SULT1C3Q6IMI6 304 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SLC41A1Q8IVJ1 513 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SIRT2Q8IXJ6 389 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SAMD14Q8IZD0 417 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 EIF1ADQ8N9N8 165 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ATP6V1C2Q8NEY4 427 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CASKIN2Q8WXE0 1202 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 FEM1CQ96JP0 617 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 COPS8Q99627 209 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 AIFM2Q9BRQ8 373 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 AARSD1Q9BTE6 412 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SLC40A1Q9NP59 571 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 RSL24D1Q9UHA3 163 aaKnown RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PCDHB3Q9Y5E6 796 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 BPNT1O95861 308 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PTENP60484 403 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 HSDL1Q3SXM5 330 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PARP15Q460N3 678 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 WASHC2DQ5SRD0 308 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 GLIS2Q9BZE0 524 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ENY2Q9NPA8 101 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PCDH10Q9P2E7 1040 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 CDC14AQ9UNH5 594 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 DMTF1Q9Y222 760 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 MEMO1Q9Y316 297 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PREX1Q8TCU6 1659 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ARHGEF33A8MVX0 844 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 HNF4AP41235 474 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 ILF3Q12906 894 aaKnown RBP eCLIP6.85□□□□□ -1.31
SCN1A-204ENST00000423058 WSCD1Q658N2 575 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 IZUMO2Q6UXV1 221 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 SLC30A8Q8IWU4 369 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 NAT16Q8N8M0 369 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 OR4L1Q8NH43 312 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 PIH1D2Q8WWB5 315 aa6.85□□□□□ -1.31
SCN1A-204ENST00000423058 HERVK_113Q902F9 699 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms