RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 C20orf96Q9NUD7 363 aaPredicted RBP18.05■□□□□ 0.48
SDC1-203ENST00000403076 USP36Q9P275 1121 aaKnown RBP18.05■□□□□ 0.48
SDC1-203ENST00000403076 LRRC72A6NJI9 287 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 PSMD11O00231 422 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 RIPK2O43353 540 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 VAPBO95292 243 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 C6P13671 934 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 SMAD1Q15797 465 aaKnown RBP18.04■□□□□ 0.48
SDC1-203ENST00000403076 LONRF1Q17RB8 773 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 BEND6Q5SZJ8 279 aaPredicted RBP18.04■□□□□ 0.48
SDC1-203ENST00000403076 OR13J1Q8NGT2 312 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 FAM131CQ96AQ9 280 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 CDKN2AIPNLQ96HQ2 116 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 SUDS3Q9H7L9 328 aaPredicted RBP18.04■□□□□ 0.48
SDC1-203ENST00000403076 RAD18Q9NS91 495 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 FKBPLQ9UIM3 349 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 COQ6Q9Y2Z9 468 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 MYLKQ15746 1914 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 BDP1A6H8Y1 2624 aa18.04■□□□□ 0.48
SDC1-203ENST00000403076 ZCWPW2A0A1B0GU75 182 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 IGLON5A6NGN9 336 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 WNT9AO14904 365 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 AXIN1O15169 862 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 RNGTTO60942 597 aaKnown RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 BPIP17213 487 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 ACSL1P33121 698 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 HSD17B3P37058 310 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 SPAM1P38567 509 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 ETV3P41162 512 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 SPINT3P49223 89 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 ARSDP51689 593 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 THOC5Q13769 683 aaKnown RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 SLC29A2Q14542 456 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 UBAP2Q5T6F2 1119 aaKnown RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 ALS2CLQ60I27 953 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 KIAA0930Q6ICG6 404 aaPredicted RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 Q6ZVL8 140 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 FBXL6Q8N531 539 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 MREGQ8N565 214 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 OTUD6BQ8N6M0 293 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 FBF1Q8TES7 1133 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 RLN3Q8WXF3 142 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 KDM4CQ9H3R0 1056 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 EPHX3Q9H6B9 360 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 PREBQ9HCU5 417 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 CD84Q9UIB8 345 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 A0A087WUV0 522 aaPredicted RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 A0A1W2PQU0 124 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 K7ESF4 209 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 TM7SF2O76062 418 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 RECQL5O94762 991 aaPredicted RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 STX2P32856 288 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 RPS21P63220 83 aaKnown RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 ACVR1Q04771 509 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 SGCGQ13326 291 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 ZDHHC20Q5W0Z9 365 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 PDPK2PQ6A1A2 396 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 KIAA1161Q6NSJ0 714 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 NEK5Q6P3R8 708 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 TRMT10BQ6PF06 316 aaKnown RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 RFLNAQ6ZTI6 216 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 PTAR1Q7Z6K3 402 aaPredicted RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 KCNMB4Q86W47 210 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 UNC5BQ8IZJ1 945 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 CBARPQ8N350 705 aaPredicted RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 TMEM105Q8N8V8 129 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 GPR26Q8NDV2 337 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 OR2T34Q8NGX1 318 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 CERS2Q96G23 380 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 TOE1Q96GM8 510 aaKnown RBP18.03■□□□□ 0.48
SDC1-203ENST00000403076 FAM83DQ9H4H8 585 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 PLAC1Q9HBJ0 212 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 IL1RAPL1Q9NZN1 696 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 APPL1Q9UKG1 709 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 SLC30A1Q9Y6M5 507 aa18.03■□□□□ 0.48
SDC1-203ENST00000403076 TCRBV9S1A1TA0A576 114 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 CCDC162PA2VCL2 907 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 RGSL1A5PLK6 1076 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 GOLGA8KD6RF30 607 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 GOLGA8TH3BQL2 631 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 TNFRSF10AO00220 468 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 SEMA4FO95754 770 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 GOT2P00505 430 aaKnown RBP18.02■□□□□ 0.47
SDC1-203ENST00000403076 IGLV3-19P01714 112 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 ERVK-10P10266 1014 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 CD6P30203 668 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 MC4RP32245 332 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 PTPN5P54829 565 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 USP39Q53GS9 565 aaKnown RBP18.02■□□□□ 0.47
SDC1-203ENST00000403076 SPDYCQ5MJ68 293 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 SEL1L3Q68CR1 1132 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 TSSK4Q6SA08 328 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 FAM151BQ6UXP7 276 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 BMP8AQ7Z5Y6 402 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 HORMAD1Q86X24 394 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 GABPB2Q8TAK5 448 aaPredicted RBP18.02■□□□□ 0.47
SDC1-203ENST00000403076 KLK6Q92876 244 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 COQ10AQ96MF6 247 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 C19orf43Q9BQ61 176 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 CCDC77Q9BR77 488 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms