RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 VAPBO95292 243 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 CLDN7O95471 211 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 ELFN1P0C7U0 828 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 MYZAPP0CAP1 466 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 HMGCLP35914 325 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 PPARGP37231 505 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 GPX6P59796 221 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 RPS14P62263 151 aaKnown RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 FRG1Q14331 258 aaKnown RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 UAP1Q16222 522 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 CNGA3Q16281 694 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 CRY1Q16526 586 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 KRT71Q3SY84 523 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 FASTKD1Q53R41 847 aaKnown RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 CEP85LQ5SZL2 805 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 DMRTA1Q5VZB9 504 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 LRRC66Q68CR7 880 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 ESRP1Q6NXG1 681 aaKnown RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 AFTPHQ6ULP2 937 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 CYS1Q717R9 158 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 DPPA4Q7L190 304 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 SDCCAG8Q86SQ7 713 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 KBTBD6Q86V97 674 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 LRRC6Q86X45 466 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 ZSWIM9Q86XI8 627 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 AGGF1Q8N302 714 aaeCLIP14.21□□□□□ -0.13
SKA1-202ENST00000398452 PPM1NQ8N819 430 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 MDGA1Q8NFP4 955 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 TSTD1Q8NFU3 115 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 OR4K2Q8NGD2 314 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 CXorf40AQ8TE69 158 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 ARRDC3Q96B67 414 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 DNAJC1Q96KC8 554 aaKnown RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 ZIM3Q96PE6 472 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 FUT8Q9BYC5 575 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 OSBPL6Q9BZF3 934 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 STMN4Q9H169 189 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 CENPHQ9H3R5 247 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 NLE1Q9NVX2 485 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 POLR3BQ9NW08 1133 aaPredicted RBP14.21□□□□□ -0.13
SKA1-202ENST00000398452 APPL1Q9UKG1 709 aa14.21□□□□□ -0.13
SKA1-202ENST00000398452 ZFHX2Q9C0A1 2572 aaPredicted RBP14.21□□□□□ -0.14
SKA1-202ENST00000398452 NPIPB15A6NHN6 443 aaPredicted RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 SMIM23A6NLE4 172 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 RASGRF2O14827 1237 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 SLC7A4O43246 635 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 PI15O43692 258 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 BUD23O43709 281 aaKnown RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 LZTS3O60299 673 aaPredicted RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 ATP5DP30049 168 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 SPAM1P38567 509 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 CNTN1Q12860 1018 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 ACOX1Q15067 660 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 LRRC73Q5JTD7 316 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 AARS2Q5JTZ9 985 aaKnown RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 MRNIPQ6NTE8 343 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 KIAA1211LQ6NV74 962 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 CRTC1Q6UUV9 634 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 SYT13Q7L8C5 426 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 HDAC10Q969S8 669 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 MRRFQ96E11 262 aaKnown RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 C19orf43Q9BQ61 176 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 WDR83Q9BRX9 315 aaKnown RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 FOXQ1Q9C009 403 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 BPIFA1Q9NP55 256 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 IARS2Q9NSE4 1012 aaKnown RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 TREX1Q9NSU2 369 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 FBXL12Q9NXK8 326 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 KCTD5Q9NXV2 234 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 SLC24A2Q9UI40 661 aa14.2□□□□□ -0.14
SKA1-202ENST00000398452 FNDC3AQ9Y2H6 1198 aaKnown RBP14.2□□□□□ -0.14
SKA1-202ENST00000398452 F5P12259 2224 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ZCWPW2A0A1B0GU75 182 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 A0A1W2PP55 124 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 A0A1W2PQF6 199 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ANTXRLA6NF34 631 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 PSMD11O00231 422 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 TSPAN6O43657 245 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 PCDH8O95206 1070 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ERVK-10P10266 1014 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ITGALP20701 1170 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 PMLP29590 882 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 P2RY2P41231 377 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 MAGEA9P43362 315 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ZNF140P52738 457 aaPredicted RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 COPAP53621 1224 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ILF2Q12905 390 aaKnown RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 MSLNQ13421 630 aaPredicted RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 ZNF284Q2VY69 593 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 KBTBD12Q3ZCT8 623 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 HSP90AA5PQ58FG0 334 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 ZRANB3Q5FWF4 1079 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 PTAR1Q7Z6K3 402 aaPredicted RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 IQCKQ8N0W5 287 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 RIBC1Q8N443 379 aaPredicted RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 TTC30BQ8N4P2 665 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 OR13C4Q8NGS5 318 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 HMGB4Q8WW32 186 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 CDKN2AIPNLQ96HQ2 116 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms