RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZFYVE1Q9HBF4 777 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 PCOLCE2Q9UKZ9 415 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 PYCARDQ9ULZ3 195 aa21.69■■□□□ 1.06
CLN3-207ENST00000395653 RGSL1A5PLK6 1076 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 USP27XA6NNY8 438 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 K7ESM1 405 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 CACNB4O00305 520 aaPredicted RBP21.68■■□□□ 1.06
CLN3-207ENST00000395653 CBFA2T3O75081 653 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 KIAA1024LP59773 190 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 EIF2B5Q13144 721 aaKnown RBP21.68■■□□□ 1.06
CLN3-207ENST00000395653 CCNG2Q16589 344 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 SIRPB2Q5JXA9 342 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 PSAPL1Q6NUJ1 521 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 ERMP1Q7Z2K6 904 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 KANSL1Q7Z3B3 1105 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 LYSMD3Q7Z3D4 306 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 KLHDC8BQ8IXV7 354 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 PELI3Q8N2H9 469 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 ATL2Q8NHH9 583 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 BAHD1Q8TBE0 780 aaPredicted RBP21.68■■□□□ 1.06
CLN3-207ENST00000395653 RHBDD1Q8TEB9 315 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 FUBP1Q96AE4 644 aaKnown RBP21.68■■□□□ 1.06
CLN3-207ENST00000395653 ABCG8Q9H221 673 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 BTBD3Q9Y2F9 522 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 ZNF711Q9Y462 761 aa21.68■■□□□ 1.06
CLN3-207ENST00000395653 CNOT1A5YKK6 2376 aaKnown RBP21.68■■□□□ 1.06
CLN3-207ENST00000395653 H3BM21 787 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 PIAS2O75928 621 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 FGF1P05230 155 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 PYGLP06737 847 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 SPINT3P49223 89 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 SLC1A5Q15758 541 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 LONRF2Q1L5Z9 754 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 PARP6Q2NL67 630 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 P3H1Q32P28 736 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 ZNF542PQ5EBM4 170 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 DRICH1Q6PGQ1 229 aaPredicted RBP21.67■■□□□ 1.06
CLN3-207ENST00000395653 RFLNAQ6ZTI6 216 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 BTN2A2Q8WVV5 523 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 AP2M1Q96CW1 435 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 PBKQ96KB5 322 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 WDR92Q96MX6 357 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 CAMK1GQ96NX5 476 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 PKD2L2Q9NZM6 624 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 ZNF148Q9UQR1 794 aa21.67■■□□□ 1.06
CLN3-207ENST00000395653 PDE2AO00408 941 aaPredicted RBP21.66■■□□□ 1.06
CLN3-207ENST00000395653 SDC3O75056 442 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 ATP1A1P05023 1023 aaKnown RBP21.66■■□□□ 1.06
CLN3-207ENST00000395653 PIRTP0C851 137 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 KELP23276 732 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 RAET1GQ6H3X3 334 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 TMC3Q7Z5M5 1100 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 RASGEF1CQ8N431 466 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 SLC25A41Q8N5S1 370 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 TEX101Q9BY14 249 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 TRABDQ9H4I3 376 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 CD84Q9UIB8 345 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 KLF15Q9UIH9 416 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 SHOC2Q9UQ13 582 aa21.66■■□□□ 1.06
CLN3-207ENST00000395653 GOLGA6CA6NDK9 693 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 GOLGA6BA6NDN3 693 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 GIPC1O14908 333 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 GOLGA6DP0CG33 693 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 MYCLP1P12525 358 aaPredicted RBP21.65■■□□□ 1.06
CLN3-207ENST00000395653 JUNDP17535 347 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 DGKAP23743 735 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 ADRA1AP35348 466 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 CHRNA4P43681 627 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 BLKP51451 505 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 ENPP7Q6UWV6 458 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 RANBP10Q6VN20 620 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 HEATR4Q86WZ0 1026 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 SLC25A45Q8N413 288 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 SCAMP4Q969E2 229 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 EID2BQ96D98 161 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 TBATAQ96M53 351 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 CDC6Q99741 560 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 FICDQ9BVA6 458 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 GPR63Q9BZJ6 419 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 PHPT1Q9NRX4 125 aaPredicted RBP21.65■■□□□ 1.06
CLN3-207ENST00000395653 GOLGA6AQ9NYA3 693 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 HACD3Q9P035 362 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 PNMA8BQ9ULN7 279 aaPredicted RBP21.65■■□□□ 1.06
CLN3-207ENST00000395653 TTC7AQ9ULT0 858 aaPredicted RBP21.65■■□□□ 1.06
CLN3-207ENST00000395653 SPO11Q9Y5K1 396 aa21.65■■□□□ 1.06
CLN3-207ENST00000395653 METTL18O95568 372 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 SOD1P00441 154 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 AGTP01019 485 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 GPR1P46091 355 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 PPARDQ03181 441 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 SNX1Q13596 522 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 TRIP6Q15654 476 aaKnown RBP21.64■■□□□ 1.06
CLN3-207ENST00000395653 ADAMTSL4Q6UY14 1074 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 GLRX5Q86SX6 157 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 PHACTR4Q8IZ21 702 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 LRRC45Q96CN5 670 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 RIOK2Q9BVS4 552 aaKnown RBP21.64■■□□□ 1.06
CLN3-207ENST00000395653 LGR4Q9BXB1 951 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 CDH19Q9H159 772 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 RAD18Q9NS91 495 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms