RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 HTR7P34969 479 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PBX1P40424 430 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PTDSS1P48651 473 aaKnown RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 MASP1P48740 699 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 KRT83P78385 493 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 SHC2P98077 582 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 HDLBPQ00341 1268 aaKnown RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 SRSF5Q13243 272 aaKnown RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 NOGQ13253 232 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 EIF4EBP1Q13541 118 aaPredicted RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 RUNX3Q13761 415 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 ACOX1Q15067 660 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 SYTL3Q4VX76 610 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 DCAF6Q58WW2 860 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 KHDC1LQ5JSQ8 128 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PAPPA-AS1Q5QFB9 102 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 WLSQ5T9L3 541 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 LIPKQ5VXJ0 399 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 WDR73Q6P4I2 378 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 SERPINA11Q86U17 422 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 WDR63Q8IWG1 891 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 RNF113BQ8IZP6 322 aaKnown RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 TMEM217Q8N7C4 229 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 ADPRHL1Q8NDY3 354 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PARD3BQ8TEW8 1205 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 DEDD2Q8WXF8 326 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 JADE3Q92613 823 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 ABTB1Q969K4 478 aaPredicted RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 USP28Q96RU2 1077 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PSMB7Q99436 277 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 SYT17Q9BSW7 474 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 P2RY12Q9H244 342 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 GORASP2Q9H8Y8 452 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 SFXN1Q9H9B4 322 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF277Q9NRM2 450 aaPredicted RBP-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 KRT84Q9NSB2 600 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PNPOQ9NVS9 261 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 CNTN6Q9UQ52 1028 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF510Q9Y2H8 683 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 JRKLQ9Y4A0 524 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 PTCH2Q9Y6C5 1203 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 NBEAQ8NFP9 2946 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 ASTN1O14525 1302 aa-0.71□□□□□ -2.52
RNU6-540P-201ENST00000384622 FREM1Q5H8C1 2179 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 SRCAPQ6ZRS2 3230 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 A0A0U1RQK1 487 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 H7C4K7 107 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 PPM1GO15355 546 aaPredicted RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 HSPA12AO43301 675 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CTSVO60911 334 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 NDUFS2O75306 463 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZNF324O75467 553 aaPredicted RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 KRT38O76015 456 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 AP2A2O94973 939 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 IL18RAPO95256 599 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 PIGNO95427 931 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CLDN1O95832 211 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 PRB1P04280 392 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 ALDOCP09972 364 aaKnown RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 TBPP20226 339 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 DRD1P21728 446 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 LMAN1P49257 510 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CYP2J2P51589 502 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 GSCP56915 257 aaPredicted RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 PPIAP62937 165 aaKnown RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 SP4Q02446 784 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CALCOCO2Q13137 446 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 GTF2H2Q13888 395 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 RNPS1Q15287 305 aaKnown RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 HLA-BQ31612 363 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 ARHGEF16Q5VV41 709 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 ALS2CLQ60I27 953 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 TTC19Q6DKK2 380 aaPredicted RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 GTF2H2CQ6P1K8 395 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CNNM4Q6P4Q7 775 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 FAM171BQ6P995 826 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 ZDHHC24Q6UX98 284 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 MDGA2Q7Z553 956 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 RASGRP3Q8IV61 690 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 ADGRF3Q8IZF5 1079 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 RNF182Q8N6D2 247 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 SLC45A3Q96JT2 553 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 SPRR2FQ96RM1 72 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 OSBPL5Q9H0X9 879 aaPredicted RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 C10orf95Q9H7T3 257 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 HEXA-AS1Q9H8Q6 139 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 MMP25Q9NPA2 562 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 FSCN3Q9NQT6 498 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 LMBRD1Q9NUN5 540 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 PCDHA6Q9UN73 950 aa-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CARHSP1Q9Y2V2 147 aaKnown RBP-0.72□□□□□ -2.52
RNU6-540P-201ENST00000384622 CACNA1BQ00975 2339 aa-0.72□□□□□ -2.53
RNU6-540P-201ENST00000384622 CHD7Q9P2D1 2997 aa-0.72□□□□□ -2.53
RNU6-540P-201ENST00000384622 MUC4Q99102 2169 aa-0.73□□□□□ -2.53
RNU6-540P-201ENST00000384622 GIMAP1-GIMAP5A0A087WTJ2 511 aa-0.73□□□□□ -2.53
RNU6-540P-201ENST00000384622 C5orf49A4QMS7 147 aa-0.73□□□□□ -2.53
RNU6-540P-201ENST00000384622 MAGEB17A8MXT2 336 aa-0.73□□□□□ -2.53
RNU6-540P-201ENST00000384622 PLOD2O00469 737 aa-0.73□□□□□ -2.53
RNU6-540P-201ENST00000384622 RNMTO43148 476 aaKnown RBP-0.73□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZIC3O60481 467 aa-0.73□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms