RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 UNKQ9C0B0 810 aaKnown RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 EBF3Q9H4W6 596 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 NPHS2Q9NP85 383 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 IGSF5Q9NSI5 407 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 KLHL14Q9P2G3 628 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CPSF2Q9P2I0 782 aaKnown RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 VWA7Q9Y334 891 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ATXN2Q99700 1313 aaKnown RBP13.77□□□□□ -0.2
PTPRF-202ENST00000372405 CCT8L1PA6NM43 557 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 HEPACAM2A8MVW5 462 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 STX7O15400 261 aaKnown RBP13.77□□□□□ -0.21
PTPRF-202ENST00000372405 ITM2AO43736 263 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 KLHL2O95198 593 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 MC4RP32245 332 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 PTPRNQ16849 979 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 YTHDF3Q7Z739 585 aaKnown RBP13.77□□□□□ -0.21
PTPRF-202ENST00000372405 PIM3Q86V86 326 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 FSTL5Q8N475 847 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-202ENST00000372405 ANKRD49Q8WVL7 239 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 LPGAT1Q92604 370 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 C7orf26Q96N11 449 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 FAM83CQ9BQN1 747 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 CPEB1Q9BZB8 566 aaKnown RBP13.77□□□□□ -0.21
PTPRF-202ENST00000372405 FAM96AQ9H5X1 160 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 TRPV4Q9HBA0 871 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 GDE1Q9NZC3 331 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 RUVBL2Q9Y230 463 aaKnown RBP13.77□□□□□ -0.21
PTPRF-202ENST00000372405 FNDC3AQ9Y2H6 1198 aaKnown RBP13.77□□□□□ -0.21
PTPRF-202ENST00000372405 MED16Q9Y2X0 877 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 KIAA1549LQ6ZVL6 1849 aa13.77□□□□□ -0.21
PTPRF-202ENST00000372405 CAPN8A6NHC0 703 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TTC34A8MYJ7 566 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 GAPDHSO14556 408 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TULP3O75386 442 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 POLR2EP19388 210 aaKnown RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 FDXRP22570 491 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 DGKGP49619 791 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 SEMG2Q02383 582 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 ATG16L1Q676U5 607 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 LRRC8EQ6NSJ5 796 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 ANKRD54Q6NXT1 300 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TSPAN33Q86UF1 283 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 LCA5Q86VQ0 697 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 HEXDCQ8WVB3 486 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 UBXN10Q96LJ8 280 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TUBGCP5Q96RT8 1024 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 GPR63Q9BZJ6 419 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 MTG2Q9H4K7 406 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 SUV39H2Q9H5I1 410 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 ZDHHC6Q9H6R6 413 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 KCNK13Q9HB14 408 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 INTS10Q9NVR2 710 aaKnown RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 MUC22E2RYF6 1773 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 EYSQ5T1H1 3165 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 A0A087X1B8 175 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 C1orf232A0A0U1RR37 186 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 NPIPB15A6NHN6 443 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 LYPLA1O75608 230 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 CLDN7O95471 211 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 POP4O95707 220 aaKnown RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 ADH1CP00326 375 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 UGT2B4P06133 528 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 DLDP09622 509 aaKnown RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 CA5AP35218 305 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 SLC6A11P48066 632 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 SLC12A2P55011 1212 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 STX3Q13277 289 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 ITGA9Q13797 1035 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TANGO2Q6ICL3 276 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 NAPRTQ6XQN6 538 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TRPM8Q7Z2W7 1104 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 SDCCAG8Q86SQ7 713 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-202ENST00000372405 TIFAQ96CG3 184 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 HPS4Q9NQG7 708 aa13.76□□□□□ -0.21
PTPRF-202ENST00000372405 A8MX80 341 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 WASH3PC4AMC7 463 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 OR1I1O60431 355 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 TGDSO95455 350 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 PMLP29590 882 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 CSHL1Q14406 222 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 SETMARQ53H47 684 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-202ENST00000372405 NAIF1Q69YI7 327 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-202ENST00000372405 FAM45BPQ6NSW5 357 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 VITQ6UXI7 678 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 FITM2Q8N6M3 262 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 FAM45AQ8TCE6 357 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 NXPE3Q969Y0 559 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 BIRC8Q96P09 236 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 LYSMD1Q96S90 227 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 SORT1Q99523 831 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 AARSD1Q9BTE6 412 aaKnown RBP13.75□□□□□ -0.21
PTPRF-202ENST00000372405 CIPCQ9C0C6 399 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 NSUN3Q9H649 340 aaKnown RBP13.75□□□□□ -0.21
PTPRF-202ENST00000372405 ZFYVE1Q9HBF4 777 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 GPAMQ9HCL2 828 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 XPR1Q9UBH6 696 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 DCTN4Q9UJW0 460 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 CORO1CQ9ULV4 474 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-202ENST00000372405 SLC27A6Q9Y2P4 619 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 PPIL1Q9Y3C6 166 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms