RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CNTN1Q12860 1018 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 RALGDSQ12967 914 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 GLIPR1L2Q4G1C9 344 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 TTMPQ5BVD1 217 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 EOGTQ5NDL2 527 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 ERAP2Q6P179 960 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 DPPA4Q7L190 304 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 RIBC1Q8N443 379 aaPredicted RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 AADATQ8N5Z0 425 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 PBXIP1Q96AQ6 731 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 FBRSQ9HAH7 460 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 MMP17Q9ULZ9 603 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 ITM2BQ9Y287 266 aa19.88■□□□□ 0.77
CLN3-205ENST00000359984 MRPS17Q9Y2R5 130 aaKnown RBP19.88■□□□□ 0.77
CLN3-205ENST00000359984 TRIOO75962 3097 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 BPTFQ12830 3046 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 H7C0S8 307 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 F7P08709 466 aaPredicted RBP19.87■□□□□ 0.77
CLN3-205ENST00000359984 C5AR1P21730 350 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 DRD3P35462 400 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 P2RY2P41231 377 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 NEK3P51956 506 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 ARHGEF7Q14155 803 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 TMED2Q15363 201 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 PACS1Q6VY07 963 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 Q6ZS52 159 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 DENND6AQ8IWF6 608 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 UBALD2Q8IYN6 164 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 SIX5Q8N196 739 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 OR4L1Q8NH43 312 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 SHDQ96IW2 340 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 C19orf43Q9BQ61 176 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 FAM167BQ9BTA0 163 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 SLC6A17Q9H1V8 727 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 LMAN1LQ9HAT1 526 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 ZNF180Q9UJW8 692 aa19.87■□□□□ 0.77
CLN3-205ENST00000359984 AREL1O15033 823 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 C1SP09871 688 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 ZNF30P17039 623 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 BPIP17213 487 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 SUOXP51687 545 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 STC1P52823 247 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 XIAPP98170 497 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 CTBP1Q13363 440 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 HSP90B2PQ58FF3 399 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 ZNF470Q6ECI4 717 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 AFTPHQ6ULP2 937 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 TMEM92Q6UXU6 159 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 RFLNAQ6ZTI6 216 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 STRA8Q7Z7C7 330 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 TMPRSS6Q8IU80 811 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 CPNE1Q99829 537 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 LTB4R2Q9NPC1 389 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 CD320Q9NPF0 282 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 MARCH4Q9P2E8 410 aaPredicted RBP19.86■□□□□ 0.77
CLN3-205ENST00000359984 FNDC3AQ9Y2H6 1198 aaKnown RBP19.86■□□□□ 0.77
CLN3-205ENST00000359984 KANSL1LA0AUZ9 987 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 GP5P40197 560 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 SLC1A2P43004 574 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 FZD5Q13467 585 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 PEX6Q13608 980 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 UBXN2BQ14CS0 331 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 TNFAIP8L3Q5GJ75 292 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 PIP5KL1Q5T9C9 394 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 AGBL2Q5U5Z8 902 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 CALML6Q8TD86 181 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 SGSM3Q96HU1 749 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 NSMCE4AQ9NXX6 385 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 FBXO5Q9UKT4 447 aa19.86■□□□□ 0.77
CLN3-205ENST00000359984 FOXO6A8MYZ6 492 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 CD3EAPO15446 510 aaKnown RBP19.85■□□□□ 0.77
CLN3-205ENST00000359984 MC4RP32245 332 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 ELP6Q0PNE2 266 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 KCTD16Q68DU8 428 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 HSD11B1LQ7Z5J1 315 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 CBARPQ8N350 705 aaPredicted RBP19.85■□□□□ 0.77
CLN3-205ENST00000359984 SYNPOQ8N3V7 929 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 PNPLA1Q8N8W4 532 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 C2CD4AQ8NCU7 369 aaPredicted RBP19.85■□□□□ 0.77
CLN3-205ENST00000359984 GPR150Q8NGU9 434 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 ATP6V1G3Q96LB4 118 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 FOXQ1Q9C009 403 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 IL26Q9NPH9 171 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 TXNDC16Q9P2K2 825 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 SERGEFQ9UGK8 458 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 MUTYHQ9UIF7 546 aa19.85■□□□□ 0.77
CLN3-205ENST00000359984 NOVA2Q9UNW9 492 aaKnown RBP19.85■□□□□ 0.77
CLN3-205ENST00000359984 A0A1W2PP55 124 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 FAM170BA6NMN3 283 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 GOLGA8CPA6NN73 597 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 GAPDHSO14556 408 aaPredicted RBP19.84■□□□□ 0.77
CLN3-205ENST00000359984 PRSS56P0CW18 603 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 GABRB3P28472 473 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 FOXN2P32314 431 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 SPINT3P49223 89 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 MPP1Q00013 466 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 LRRC32Q14392 662 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 AGBL4Q5VU57 503 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 LIPIQ6XZB0 460 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 CILP2Q8IUL8 1156 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms