RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 PCDHGA3Q9Y5H0 932 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 CASKO14936 926 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 ARFIP1P53367 373 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 STXBP1P61764 594 aaKnown RBP18.37■□□□□ 0.53
SHANK1-202ENST00000359082 MRPS5P82675 430 aaKnown RBP18.37■□□□□ 0.53
SHANK1-202ENST00000359082 USP4Q13107 963 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 CAPSQ13938 189 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 OR8D1Q8WZ84 308 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 PMM1Q92871 262 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 CLCC1Q96S66 551 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 WDR18Q9BV38 432 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 A0A1W2PPM1 405 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 YDJCA8MPS7 323 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 PSMD10O75832 226 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 ABHD2P08910 425 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 TCF4P15884 667 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 TTKP33981 857 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 TAS2R40P59535 323 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 PPP2R2BQ00005 443 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 DLG2Q15700 870 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 RASSF1Q9NS23 344 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 CCNDBP1O95273 360 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 IFNGP01579 166 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 GTF2BQ00403 316 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 MBTD1Q05BQ5 628 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.37■□□□□ 0.53
SHANK1-202ENST00000359082 CXorf57Q6NSI4 855 aaKnown RBP18.37■□□□□ 0.53
SHANK1-202ENST00000359082 HSFY1Q96LI6 401 aa18.37■□□□□ 0.53
SHANK1-202ENST00000359082 FFAR2O15552 330 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 B4GALT5O43286 388 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 SCGNO76038 276 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 CAPGP40121 348 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 PSMD5Q16401 504 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 APOBEC3HQ6NTF7 200 aaKnown RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TAPT1Q6NXT6 567 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 S100ZQ8WXG8 99 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 OSBPL11Q9BXB4 747 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 BRINP2Q9C0B6 783 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 NT5C1B-RDH14C9J2C7 533 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 DGKZQ13574 1117 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 CBFBQ13951 182 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 FAM46CQ5VWP2 391 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 SFRP1Q8N474 314 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 CXCR3P49682 368 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 NR1H2P55055 460 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 FAM71AQ8IYT1 594 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 RBFAQ8N0V3 343 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 A0A1W2PQH9 124 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 CABYRO75952 493 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 ACADLP28330 430 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 AQP1P29972 269 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 RPS6KA3P51812 740 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 IL18Q14116 193 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 OR10H5Q8NGA6 315 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3DA0A087WVF3 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3IA0A087WXS9 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3EA0A087X179 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3KA0A087X1G2 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3FA6NER0 549 aaPredicted RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3LB9A6J9 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 CACNB4O00305 520 aaPredicted RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 PDE2AO00408 941 aaPredicted RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 PCCBP05166 539 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3HP0C7X1 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 MSX2P35548 267 aaPredicted RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 IGFALSP35858 605 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 RPL7AP62424 266 aaKnown RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3GQ6DHY5 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3CQ6IPX1 549 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TBC1D3Q8IZP1 549 aaPredicted RBP18.36■□□□□ 0.53
SHANK1-202ENST00000359082 ST3GAL5Q9UNP4 418 aa18.36■□□□□ 0.53
SHANK1-202ENST00000359082 TIPRLO75663 272 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 ETS2P15036 469 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 PDHA2P29803 388 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 RIPK1Q13546 671 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 CERCAMQ5T4B2 595 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 CLK4Q9HAZ1 481 aaKnown RBP18.35■□□□□ 0.53
SHANK1-202ENST00000359082 PLGRKTQ9HBL7 147 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 AP4B1Q9Y6B7 739 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 DNTTP04053 509 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 MTHFRP42898 656 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 SMAD3P84022 425 aaKnown RBP18.35■□□□□ 0.53
SHANK1-202ENST00000359082 CDK18Q07002 472 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 LRRC38Q5VT99 294 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 TMPRSS11BQ86T26 416 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 PHF13Q86YI8 300 aaPredicted RBP18.35■□□□□ 0.53
SHANK1-202ENST00000359082 TMEM161BQ8NDZ6 487 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 ATP6V1C2Q8NEY4 427 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 GPER1Q99527 375 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 LRRC19Q9H756 370 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 KCNMB3Q9NPA1 279 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 CIDEBQ9UHD4 219 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 RAB23Q9ULC3 237 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 HDAC3O15379 428 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 TRBC1P01850 177 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 CDH5P33151 784 aaPredicted RBP18.35■□□□□ 0.53
SHANK1-202ENST00000359082 ATP6V0D1P61421 351 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 PLPP4Q5VZY2 271 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 ANKS1BQ7Z6G8 1248 aa18.35■□□□□ 0.53
SHANK1-202ENST00000359082 CMC1Q7Z7K0 106 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms