RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CENPTQ96BT3 561 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 LRIG1Q96JA1 1093 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 COQ10AQ96MF6 247 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 LYSMD1Q96S90 227 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 LRRC40Q9H9A6 602 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 POLMQ9NP87 494 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 FAM86C1Q9NVL1 165 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 WHRNQ9P202 907 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 FKBPLQ9UIM3 349 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CNOT6Q9ULM6 557 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 PHTF1Q9UMS5 762 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CHMP2BQ9UQN3 213 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 UTP11Q9Y3A2 253 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZNF711Q9Y462 761 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 OR1A2Q9Y585 309 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 GOLGA4Q13439 2230 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 ARID1BQ8NFD5 2236 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 CXorf49A8MYA2 514 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 PRR33A8MZF0 331 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 PATE3B3GLJ2 98 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 E7ESA3 106 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 NEMP1O14524 444 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 LAMTOR5O43504 91 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 RNGTTO60942 597 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 PAPSS2O95340 614 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 WNT1P04628 370 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ITPKAP23677 461 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 GABRB3P28472 473 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 HMGCLP35914 325 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CCR3P51677 355 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZNF140P52738 457 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 EPHB1P54762 984 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CDH17Q12864 832 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 PDIA2Q13087 525 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 MORF4L2Q15014 288 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 TCEA2Q15560 299 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 UAP1Q16222 522 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 HSF5Q4G112 596 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 ALS2CLQ60I27 953 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 METTL3Q86U44 580 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 CCDC25Q86WR0 208 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZBTB44Q8NCP5 570 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 MCUQ8NE86 351 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 BRSK1Q8TDC3 778 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 HDAC10Q969S8 669 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 LRRC45Q96CN5 670 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 LENG8Q96PV6 779 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 OSBPL1AQ9BXW6 950 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 TXLNGYQ9BZA5 131 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 DUSP15Q9H1R2 295 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZFYVE1Q9HBF4 777 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 MAGEE1Q9HCI5 957 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 EIF2B3Q9NR50 452 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 TREX1Q9NSU2 369 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 KLF15Q9UIH9 416 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 PSAT1Q9Y617 370 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CEP192Q8TEP8 1941 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 SCN8AQ9UQD0 1980 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ATXN2Q99700 1313 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 CEP295Q9C0D2 2601 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 TDRD6O60522 2096 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 SPENQ96T58 3664 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 LATO43561 262 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 OR1I1O60431 355 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 RNASEH1O60930 286 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 FAM155BO75949 473 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 SEMA4FO95754 770 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ADH1BP00325 375 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ACADMP11310 421 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CES1P23141 567 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CD6P30203 668 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 SPINT3P49223 89 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 RAD51Q06609 339 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 PDE1CQ14123 709 aaPredicted RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 INPP5AQ14642 412 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 EFTUD2Q15029 972 aaKnown RBP eCLIP4.02□□□□□ -1.77
LIG4-201ENST00000356922 ATP13A5Q4VNC0 1218 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 PSAPL1Q6NUJ1 521 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 UNC5AQ6ZN44 842 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 DPPA4Q7L190 304 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 TMEM135Q86UB9 458 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 DENND6AQ8IWF6 608 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 SFTPA2Q8IWL1 248 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZBED8Q8IZ13 594 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 SLC22A18ASQ8N1D0 253 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ZCCHC9Q8N567 271 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 CAMKK1Q8N5S9 505 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 FBXO36Q8NEA4 188 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 CDKN2AIPNLQ96HQ2 116 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 RIOK2Q9BVS4 552 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 BOCQ9BWV1 1114 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 C1QTNF2Q9BXJ5 285 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 ADGRE3Q9BY15 652 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 BTBD1Q9H0C5 482 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 DYRK4Q9NR20 520 aa4.02□□□□□ -1.77
LIG4-201ENST00000356922 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.02□□□□□ -1.77
LIG4-201ENST00000356922 EIF2B4Q9UI10 523 aaKnown RBP4.02□□□□□ -1.77
LIG4-201ENST00000356922 ARIH1Q9Y4X5 557 aaPredicted RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms