RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.63□□□□□ -1.03
TRIM55-204ENST00000353317 IARS2Q9NSE4 1012 aaKnown RBP8.63□□□□□ -1.03
TRIM55-204ENST00000353317 C20orf96Q9NUD7 363 aaPredicted RBP8.63□□□□□ -1.03
TRIM55-204ENST00000353317 TRPM5Q9NZQ8 1165 aa8.63□□□□□ -1.03
TRIM55-204ENST00000353317 HCFC2Q9Y5Z7 792 aa8.63□□□□□ -1.03
TRIM55-204ENST00000353317 C2orf16Q68DN1 1984 aa8.63□□□□□ -1.03
TRIM55-204ENST00000353317 A0A0D9SEW6 157 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 PRSS51A0A1B0GVH4 220 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 A0A1W2PRU2 124 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 CCDC78A2IDD5 438 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 EPOPA6NHQ4 379 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 DRGXA6NNA5 263 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 C5orf67F2Z3F1 127 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 PDLIM1O00151 329 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 PHGDHO43175 533 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TIMM44O43615 452 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 H2AFYO75367 372 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 GJB3O75712 270 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TNFAIP8O95379 198 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 JCHAINP01591 159 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 PYGLP06737 847 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TPH1P17752 444 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TCN1P20061 433 aaPredicted RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TACR2P21452 398 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 GABRR2P28476 465 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 ACVRL1P37023 503 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 EPHB3P54753 998 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 NSUN2Q08J23 767 aaKnown RBP eCLIP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 MYLK3Q32MK0 819 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 ZYG11AQ6WRX3 759 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 RBM23Q86U06 439 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 LSMEM2Q8N112 164 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 AHI1Q8N157 1196 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 GALNT4Q8N4A0 578 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 HMCESQ96FZ2 354 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 CEP295NLQ96MC4 621 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 MLPHQ9BV36 600 aaPredicted RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 ZNF696Q9H7X3 374 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TRPC7Q9HCX4 862 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TLR9Q9NR96 1032 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 UBP1Q9NZI7 540 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 AGO1Q9UL18 857 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 AK5Q9Y6K8 562 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 CCDC160A6NGH7 325 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 WASH4PA8MWX3 477 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 ACOT8O14734 319 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 MOSPD3O75425 235 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 BCAS2O75934 225 aaPredicted RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 CAPNS1P04632 268 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 ME2P23368 584 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 NMBRP28336 390 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 CORO1AP31146 461 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 NTHL1P78549 312 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 PRKAA1Q13131 559 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 FRG1Q14331 258 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TAF12Q16514 161 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 NXNQ6DKJ4 435 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 B3GNT6Q6ZMB0 384 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 GPR65Q8IYL9 337 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 LGI2Q8N0V4 545 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 ATP6V0D2Q8N8Y2 350 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 TTC16Q8NEE8 873 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 SPATA22Q8NHS9 363 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 PDCD6IPQ8WUM4 868 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 OVCA2Q8WZ82 227 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 RPRD1AQ96P16 312 aaPredicted RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 NPAS2Q99743 824 aa8.62□□□□□ -1.03
TRIM55-204ENST00000353317 MRPS26Q9BYN8 205 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 DDX18Q9NVP1 670 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 HELZP42694 1942 aaKnown RBP8.62□□□□□ -1.03
TRIM55-204ENST00000353317 BRWD1Q9NSI6 2320 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 MIA3Q5JRA6 1907 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 A0A1B0GTW7 788 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 TCAF2A6NFQ2 919 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 TMEM233B4DJY2 109 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 TARM1B6A8C7 271 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 SLC22A2O15244 555 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 ACSL4O60488 711 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 TSPAN3O60637 253 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 RNASEH2AO75792 299 aaKnown RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 OLFM2O95897 454 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 PENKP01210 267 aaPredicted RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 ADH1AP07327 375 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 SLC35E2BP0CK96 405 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 SLC2A3P11169 496 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 PCSK6P29122 969 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 AVPR1AP37288 418 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 RANBP1P43487 201 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 CSE1LP55060 971 aaKnown RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 ART3Q13508 389 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 APOFQ13790 326 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 ANO4Q32M45 955 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 ZC3HC1Q86WB0 502 aaKnown RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 CENPLQ8N0S6 344 aaPredicted RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 UMODL1-AS1Q8N2C9 162 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 FSTL5Q8N475 847 aaPredicted RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 TMEM102Q8N9M5 508 aaPredicted RBP8.61□□□□□ -1.03
TRIM55-204ENST00000353317 CATSPER1Q8NEC5 780 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 PDZD8Q8NEN9 1154 aa8.61□□□□□ -1.03
TRIM55-204ENST00000353317 KCTD4Q8WVF5 259 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms