RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 AFAP1L2Q8N4X5 818 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 PTGR2Q8N8N7 351 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 MDGA1Q8NFP4 955 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 OR4K2Q8NGD2 314 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 FAR2Q96K12 515 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 NSUN5Q96P11 429 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 ZBED2Q9BTP6 218 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 ERVK-6Q9BXR3 956 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 MAGEH1Q9H213 219 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 UBA2Q9UBT2 640 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 FNDC3AQ9Y2H6 1198 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 CBX4O00257 560 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 COCHO43405 550 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 GPC4O75487 556 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 LYNP07948 512 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 CDKN1CP49918 316 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 PDAP1Q13442 181 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 RBBP5Q15291 538 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 ALG1LQ6GMV1 187 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 GPR150Q8NGU9 434 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 L3HYPDHQ96EM0 354 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 SCLYQ96I15 445 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 TUBGCP5Q96RT8 1024 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 MRPL1Q9BYD6 325 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 ADA2Q9NZK5 511 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 H7C4K7 107 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PSMD12O00232 456 aaPredicted RBP19.33■□□□□ 0.69
COL9A3-201ENST00000343916 FBP2O00757 339 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 TSPAN3O60637 253 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 IRF1P10914 325 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 MTHFD2P13995 350 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 ME2P23368 584 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 FMO4P31512 558 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 SLC26A3P40879 764 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 SLC11A2P49281 568 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 GALNT1Q10472 559 aaPredicted RBP19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PTK2BQ14289 1009 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 GSTA3Q16772 222 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 MMEL1Q495T6 779 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 C16orf59Q7L2K0 433 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 GLT6D1Q7Z4J2 308 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 NPAS4Q8IUM7 802 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PQLC1Q8N2U9 271 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PPP2R3CQ969Q6 453 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PSKH2Q96QS6 385 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 SEPT3Q9UH03 358 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 VPS28Q9UK41 221 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PSMD13Q9UNM6 376 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 PCDHGC4Q9Y5F7 938 aa19.33■□□□□ 0.69
COL9A3-201ENST00000343916 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.33■□□□□ 0.68
COL9A3-201ENST00000343916 MYCP01106 439 aaPredicted RBP19.33■□□□□ 0.68
COL9A3-201ENST00000343916 CDH4P55283 916 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 FOXA1P55317 472 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 OXCT1P55809 520 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 C5orf22Q49AR2 442 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 MFN1Q8IWA4 741 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 WBP2Q969T9 261 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 ZNF599Q96NL3 588 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 NR1H4Q96RI1 486 aaPredicted RBP19.33■□□□□ 0.68
COL9A3-201ENST00000343916 TTLL2Q9BWV7 592 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 GIMAP2Q9UG22 337 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 PCDHGA7Q9Y5G6 932 aa19.33■□□□□ 0.68
COL9A3-201ENST00000343916 ZNF840PA6NDX5 716 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 CAPN8A6NHC0 703 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 PRLP01236 227 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 CORO1AP31146 461 aaKnown RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 ZNF140P52738 457 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 INHBCP55103 352 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 SMARCB1Q12824 385 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 ELAVL2Q12926 359 aaKnown RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 GEN1Q17RS7 908 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 ACBD5Q5T8D3 534 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 PAQR3Q6TCH7 311 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 BBS5Q8N3I7 341 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 PEX13Q92968 403 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 KLHL32Q96NJ5 620 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 AARSD1Q9BTE6 412 aaKnown RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 HMX1Q9NP08 348 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 IKZF3Q9UKT9 509 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 MED16Q9Y2X0 877 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 DNAJC15Q9Y5T4 150 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 ANKRD12Q6UB98 2062 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 CASQ2O14958 399 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 INSIG1O15503 277 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 HOXD10P28358 340 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 ALDH1A3P47895 512 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 BTG3Q14201 252 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 SQLEQ14534 574 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 RFTN1Q14699 578 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-201ENST00000343916 UGT3A2Q3SY77 523 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 PAOXQ6QHF9 649 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 LAYNQ6UX15 382 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 LINGO4Q6UY18 593 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 CRIPAKQ8N1N5 446 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 C19orf60Q96EN9 201 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 GBP5Q96PP8 586 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 KCNA7Q96RP8 456 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 TRIM4Q9C037 500 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 VCX3BQ9H321 246 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 COPS7BQ9H9Q2 264 aaPredicted RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms