RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HECTD2Q5U5R9 776 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 GRAMD4Q6IC98 578 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 TRIM42Q8IWZ5 723 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 TNS4Q8IZW8 715 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 CENPLQ8N0S6 344 aaPredicted RBP15.45■□□□□ 0.06
LIMS1-202ENST00000338045 CPA6Q8N4T0 437 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 KDM1BQ8NB78 822 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 RAB3IL1Q8TBN0 382 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 GRAMD1AQ96CP6 724 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 NDNQ99608 321 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 OLFM1Q99784 485 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 HEPHQ9BQS7 1158 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 MECRQ9BV79 373 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 BPIFA1Q9NP55 256 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 ACOT9Q9Y305 439 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 VWA7Q9Y334 891 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 STARD13Q9Y3M8 1113 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 WASF2Q9Y6W5 498 aa15.45■□□□□ 0.06
LIMS1-202ENST00000338045 SZT2Q5T011 3432 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 WISP3O95389 354 aaPredicted RBP15.44■□□□□ 0.06
LIMS1-202ENST00000338045 IL1BP01584 269 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 UGT2B4P06133 528 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PSMC3P17980 439 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 SAT1P21673 171 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 BGNP21810 368 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 MC4RP32245 332 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 LTBRP36941 435 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 FAM45BPQ6NSW5 357 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 CGB2Q6NT52 195 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 ZNF549Q6P9A3 640 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 GDPD4Q6W3E5 623 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 FAM47EQ6ZV65 393 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 CCDC91Q7Z6B0 441 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 FAM45AQ8TCE6 357 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 NXPE3Q969Y0 559 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 TSPAN17Q96FV3 270 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 MSLNLQ96KJ4 702 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 ELAC2Q9BQ52 826 aaKnown RBP15.44■□□□□ 0.06
LIMS1-202ENST00000338045 DENND4AQ7Z401 1863 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 A0A087X1B8 175 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 C1orf232A0A0U1RR37 186 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 TSPAN11A1L157 253 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 NPIPB15A6NHN6 443 aaPredicted RBP15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PRSS56P0CW18 603 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PMLP29590 882 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 OPRD1P41143 372 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 MTHFRP42898 656 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PGGT1BP53609 377 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 SLC12A2P55011 1212 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 ZNF460Q14592 562 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PCLAFQ15004 111 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 BRAT1Q6PJG6 821 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 TPRG1Q6ZUI0 275 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 USP45Q70EL2 814 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 NUDCD3Q8IVD9 361 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PIANPQ8IYJ0 282 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 CACNA2D3Q8IZS8 1091 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 PAF1Q8N7H5 531 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 LPGAT1Q92604 370 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 LRIG1Q96JA1 1093 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 NMRAL1Q9HBL8 299 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 COPG2Q9UBF2 871 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 CRYL1Q9Y2S2 319 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 MTCH2Q9Y6C9 303 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 KIAA1549LQ6ZVL6 1849 aa15.44■□□□□ 0.06
LIMS1-202ENST00000338045 TNRC18O15417 2968 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-202ENST00000338045 EBAG9O00559 213 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 GAPDHSO14556 408 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-202ENST00000338045 ECI2O75521 394 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 CLDN7O95471 211 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 POU3F3P20264 500 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-202ENST00000338045 SUOXP51687 545 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 ST8SIA6P61647 398 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 GRM2Q14416 872 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 RNF187Q5TA31 235 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-202ENST00000338045 PSAPL1Q6NUJ1 521 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 CRTC1Q6UUV9 634 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 PARM1Q6UWI2 310 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 CHRDL2Q6WN34 429 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 YAF2Q8IY57 180 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 CBARPQ8N350 705 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-202ENST00000338045 TMEM151AQ8N4L1 468 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 TERB1Q8NA31 727 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 KCTD4Q8WVF5 259 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 FGF14Q92915 247 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 KLHL32Q96NJ5 620 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 GPR78Q96P69 363 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 OSBPL1AQ9BXW6 950 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 POMKQ9H5K3 350 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 CLDND1Q9NY35 253 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 VPS9D1Q9Y2B5 631 aa15.43■□□□□ 0.06
LIMS1-202ENST00000338045 MUC22E2RYF6 1773 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-202ENST00000338045 KLHL2O95198 593 aa15.42■□□□□ 0.06
LIMS1-202ENST00000338045 APOA4P06727 396 aa15.42■□□□□ 0.06
LIMS1-202ENST00000338045 FDXRP22570 491 aa15.42■□□□□ 0.06
LIMS1-202ENST00000338045 SP100P23497 879 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-202ENST00000338045 ALDH3A1P30838 453 aa15.42■□□□□ 0.06
LIMS1-202ENST00000338045 GJA4P35212 333 aa15.42■□□□□ 0.06
LIMS1-202ENST00000338045 SLC26A3P40879 764 aa15.42■□□□□ 0.06
LIMS1-202ENST00000338045 EIF2DP41214 584 aaKnown RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms