RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 MON1AQ86VX9 555 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 UBASH3BQ8TF42 649 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 CLP1Q92989 425 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 CHCHD6Q9BRQ6 235 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 GIN1Q9NXP7 522 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 MAN2B2Q9Y2E5 1009 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 RFTN1Q14699 578 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 ABHD15Q6UXT9 468 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SYTL1Q8IYJ3 562 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 OMA1Q96E52 524 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 OR52E6Q96RD3 313 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC7A5P2Q9GIP4 190 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 PRDM12Q9H4Q4 367 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 DOCK2Q92608 1830 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SERPINA1P01009 418 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 UNGP13051 313 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 TLX1P31314 330 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 FMO4P31512 558 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 RPS9P46781 194 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 BLVRAP53004 296 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 C10orf62Q5T681 223 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 APTXQ7Z2E3 356 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 C15orf40Q8WUR7 153 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 P2RY11Q96G91 374 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 RETREG1Q9H6L5 497 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SEMA4BQ9NPR2 832 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 NUP205Q92621 2012 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CAPN1P07384 714 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 ZSCAN5DPP0CG00 497 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 PROZP22891 400 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 YBEYP58557 167 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 C9orf57Q5W0N0 161 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBA3EQ6PEY2 450 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TNS4Q8IZW8 715 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 GPC2Q8N158 579 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 BBS4Q96RK4 519 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF347Q96SE7 839 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 THG1LQ9NWX6 298 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 C4BPAP04003 597 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 DARSP14868 501 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 FGFR3P22607 806 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 PLEKHG6Q3KR16 790 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 RPP40O75818 363 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CCNDBP1O95273 360 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MYL9P24844 172 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 FLT3P36888 993 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 C15orf59Q2T9L4 293 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 FGD3Q5JSP0 725 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 C3orf67Q6ZVT6 689 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MTSS1LQ765P7 747 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 PEG10Q86TG7 708 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TRPV1Q8NER1 839 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 STYXQ8WUJ0 223 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MRM3Q9HC36 420 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 SNX7Q9UNH6 387 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 ATRNL1Q5VV63 1379 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 IRF1P10914 325 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TSC22D1Q15714 1073 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 DPYSL2Q16555 572 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CYP20A1Q6UW02 462 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 BPIFB6Q8NFQ5 453 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TEX47Q8TBZ9 253 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CELF6Q96J87 481 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBA1CQ9BQE3 449 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 ROGDIQ9GZN7 287 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CDT1Q9H211 546 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TRIM43BA6NCK2 446 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 URADA6NGE7 173 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 GPD2P43304 727 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 SEMA5AQ13591 1074 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CAPSQ13938 189 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MYBPC3Q14896 1274 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MAPK11Q15759 364 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 LRP10Q7Z4F1 713 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 SLCO6A1Q86UG4 719 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 EDEM1Q92611 657 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 KCTD5Q9NXV2 234 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CFL2Q9Y281 166 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 WDR37Q9Y2I8 494 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 KCNE2Q9Y6J6 123 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 DHX15O43143 795 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 HCAR3P49019 387 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 FOXD4Q12950 439 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 SETMARQ53H47 684 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 ADI1Q9BV57 179 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CADM1Q9BY67 442 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC25A51Q9H1U9 297 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 RPRD1BQ9NQG5 326 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TRPC4Q9UBN4 977 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 GNPDA1P46926 289 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MAPKAPK2P49137 400 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 NDST2P52849 883 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 CRYBB1P53674 252 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 USP46P62068 366 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 ECM1Q16610 540 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 MFSD4BQ5TF39 518 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 SPATA2Q9UM82 520 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TOGARAM1Q9Y4F4 1720 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 GNRH1P01148 92 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms