RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GET4Q7L5D6 327 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 ZBTB8OSQ8IWT0 167 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 AQP12AQ8IXF9 295 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 SPATA22Q8NHS9 363 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 HMG20AQ9NP66 347 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 ITM2CQ9NQX7 267 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 ANKMY1Q9P2S6 941 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 AASSQ9UDR5 926 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 PCDHGA3Q9Y5H0 932 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 A8MT66 165 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 NPHS1O60500 1241 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 MZF1P28698 734 aaPredicted RBP13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 KCNC1P48547 511 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 CLCN3P51790 818 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 TRIM32Q13049 653 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 LAMC2Q13753 1193 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 PKDCCQ504Y2 493 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 CATSPEREQ5SY80 951 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 LARP4Q71RC2 724 aaKnown RBP eCLIP13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 PIWIL4Q7Z3Z4 852 aaKnown RBP13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 TP63Q9H3D4 680 aaPredicted RBP13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 CDHR5Q9HBB8 845 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 MAP3K20Q9NYL2 800 aaKnown RBP13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 FZD10Q9ULW2 581 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 SNX10Q9Y5X0 201 aa13.46□□□□□ -0.26
CCDC88C-201ENST00000331194 ANKRD34BA5PLL1 514 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 LRRC14BA6NHZ5 514 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ABCB7O75027 752 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 MYCLP1P12525 358 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CRHBPP24387 322 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 BMPR1AP36894 532 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 LEPRP48357 1165 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CTF1Q16619 201 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 FBXO48Q5FWF7 155 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ATAD3BQ5T9A4 648 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 COLGALT2Q8IYK4 626 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 DEFB106AQ8N104 65 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SH3RF2Q8TEC5 729 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CENPIQ92674 756 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CGREF1Q99674 301 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ATXN3LQ9H3M9 355 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SMURF2Q9HAU4 748 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 WDR70Q9NW82 654 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ACTR3BQ9P1U1 418 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 PRELID1Q9Y255 219 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 PCDHGA8Q9Y5G5 932 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 PMF1-BGLAPU3KQ54 211 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SIP14410 1827 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 TTC24A2A3L6 582 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 NOBOXO60393 691 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 DDNO94850 711 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SUPT7LO94864 414 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CYP2B6P20813 491 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ATP5F1P24539 256 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 GSK3BP49841 420 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SULT1E1P49888 294 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SEPHS1P49903 392 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 FOXA1P55317 472 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 VBP1P61758 197 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 FRG1Q14331 258 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SLC10A6Q3KNW5 377 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ARL13BQ3SXY8 428 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 LCN8Q6JVE9 175 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 FRA10AC1Q70Z53 315 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CATSPER4Q7RTX7 472 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ZCCHC7Q8N3Z6 543 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 SLC16A10Q8TF71 515 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 ITCHQ96J02 903 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 KCNA7Q96RP8 456 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 CHID1Q9BWS9 393 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 LRRC4Q9HBW1 653 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 NRBP2Q9NSY0 501 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 BAG5Q9UL15 447 aa13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 MKI67P46013 3256 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-201ENST00000331194 GUCY1B2O75343 617 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 NADKO95544 446 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 LDLRP01130 860 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 STX1BP61266 288 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PLA2G4EQ3MJ16 856 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 KCTD11Q693B1 232 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PLEKHG7Q6ZR37 379 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 USP43Q70EL4 1123 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 STK32CQ86UX6 486 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PEX5LQ8IYB4 626 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 NPWQ8N729 165 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 LRRC58Q96CX6 371 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 NRBF2Q96F24 287 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 SETD4Q9NVD3 440 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PNMA8BQ9ULN7 279 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PCDHB3Q9Y5E6 796 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PCDHGA11Q9Y5H2 935 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 CITO14578 2027 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 LAMA3Q16787 3333 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 EVPLQ92817 2033 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 ACKR2O00590 384 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 ANGPT2O15123 496 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 MT-CYBP00156 380 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 JUNBP17275 347 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 CTU2Q2VPK5 515 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 FAM209AQ5JX71 171 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms