RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SUCOQ9UBS9 1254 aaKnown RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 EDF1O60869 148 aaKnown RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 RLN2P04090 185 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 MYBPC1Q00872 1141 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 RBM48Q5RL73 367 aaKnown RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TRABD2AQ86V40 505 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 FAM84BQ96KN1 310 aaPredicted RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 EVA1BQ9NVM1 165 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 TSPAN16Q9UKR8 245 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 PCDHGB6Q9Y5F9 930 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 DIDO1Q9BTC0 2240 aaKnown RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.28□□□□□ -0.12
COL7A1-201ENST00000328333 OR2AT4A6NND4 320 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 PRAMEF1O95521 474 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 FGFR1P11362 822 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 MPP2Q14168 576 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 FAM131BQ86XD5 332 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF606Q8WXB4 792 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 NRXN1Q9ULB1 1477 aa14.28□□□□□ -0.12
COL7A1-201ENST00000328333 DISP2A7MBM2 1401 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 C17orf102A2RUQ5 167 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CABYRO75952 493 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CD2P06729 351 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 IRF1P10914 325 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 AXLP30530 894 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 RPS9P46781 194 aaKnown RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 HMGCS2P54868 508 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 STXBP5Q5T5C0 1151 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 ZSWIM2Q8NEG5 633 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 ZFAND2BQ8WV99 257 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 SEMA4DQ92854 862 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 IFT46Q9NQC8 304 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CLEC4AQ9UMR7 237 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 TFR2Q9UP52 801 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 TRAF6Q9Y4K3 522 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 FAM205CA6NFA0 338 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 FGFR2P21802 821 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 USP49Q70CQ1 688 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 TRMT11Q7Z4G4 463 aaKnown RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CPSF7Q8N684 471 aaKnown RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 ACSF2Q96CM8 615 aaPredicted RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 OAS3Q9Y6K5 1087 aaKnown RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 LTN1O94822 1766 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 XKRYO14609 159 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CCNDBP1O95273 360 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 FGF1P05230 155 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CD44P16070 742 aaKnown RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 ARF4P18085 180 aaPredicted RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 BRINP3Q76B58 766 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 BEND5Q7L4P6 421 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF347Q96SE7 839 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 OSGEPL1Q9H4B0 414 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 RHOJQ9H4E5 214 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 GRHL1Q9NZI5 618 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 RTTNQ86VV8 2226 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 NUAK1O60285 661 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 CKBP12277 381 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 ECHS1P30084 290 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 TKTL1P51854 596 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 LSM3P62310 102 aaKnown RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 PLEKHG4Q58EX7 1191 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 NIPAL1Q6NVV3 410 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 DSELQ8IZU8 1212 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 C9orf43Q8TAL5 461 aaPredicted RBP14.27□□□□□ -0.12
COL7A1-201ENST00000328333 FATE1Q969F0 183 aa14.27□□□□□ -0.12
COL7A1-201ENST00000328333 TRIM64CA6NLI5 447 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 MAPK10P53779 464 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 BNIP1Q12981 228 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 GRM3Q14832 879 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 ARMC12Q5T9G4 340 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 NIPA1Q7RTP0 329 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 TUBA1CQ9BQE3 449 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 NPHP4O75161 1426 aaPredicted RBP14.27□□□□□ -0.13
COL7A1-201ENST00000328333 LIASO43766 372 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 ACSL1P33121 698 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 PTPN5P54829 565 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 MAMLD1Q13495 774 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 KCNK18Q7Z418 384 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 C4orf19Q8IY42 314 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 ALG2Q9H553 416 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 MARK1Q9P0L2 795 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 OTOFQ9HC10 1997 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 KDELR1P24390 212 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 EFEMP1Q12805 493 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 ILF3Q12906 894 aaKnown RBP eCLIP14.27□□□□□ -0.13
COL7A1-201ENST00000328333 GLB1L3Q8NCI6 653 aaPredicted RBP14.27□□□□□ -0.13
COL7A1-201ENST00000328333 UFD1Q92890 307 aa14.27□□□□□ -0.13
COL7A1-201ENST00000328333 GTPBP2Q9BX10 602 aaKnown RBP14.27□□□□□ -0.13
COL7A1-201ENST00000328333 SEMA4BQ9NPR2 832 aaPredicted RBP14.27□□□□□ -0.13
COL7A1-201ENST00000328333 FABP3P05413 133 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 EPCAMP16422 314 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ZNF613Q6PF04 617 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CPNE9Q8IYJ1 553 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 HIPK3Q9H422 1215 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 KAT8Q9H7Z6 458 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ELL3Q9HB65 397 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ASLP04424 464 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 BUD31P41223 144 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CLK2P49760 499 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SGCGQ13326 291 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms