RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CLIP3Q96DZ5 547 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 SLX1AQ9BQ83 275 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 ADI1Q9BV57 179 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 EMILIN2Q9BXX0 1053 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 WDR12Q9GZL7 423 aaKnown RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 RPF2Q9H7B2 306 aaKnown RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 FANCEQ9HB96 536 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TLR8Q9NR97 1041 aaKnown RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 TMX2-CTNND1H3BSU7 103 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 HTRA2O43464 458 aaPredicted RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 CLPXO76031 633 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 BEST1O76090 585 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 GSNP06396 782 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 STMN1P16949 149 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 MATKP42679 507 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CDKN2BP42772 138 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 ALDH3B2P48448 385 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 KIF19Q2TAC6 998 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 RTP2Q5QGT7 225 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 OTUD3Q5T2D3 398 aaPredicted RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 TXNRD3NBQ6F5E7 133 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 FAAH2Q6GMR7 532 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 NPNTQ6UXI9 565 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 IGFN1Q86VF2 1251 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 C11orf74Q86VG3 221 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 LILRA2Q8N149 483 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CLIP4Q8N3C7 705 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.91□□□□□ -0.66
LSM3-201ENST00000306024 ZNF781Q8N8C0 355 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 MCRS1Q96EZ8 462 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 DEPDC7Q96QD5 511 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 TBCBQ99426 244 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CDH19Q9H159 772 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 PIH1D1Q9NWS0 290 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 RNF11Q9Y3C5 154 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 A6NL46 340 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CCRL2O00421 344 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 TRUB2O95900 331 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 PSMA4P25789 261 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 CASP2P42575 452 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 PLD1Q13393 1074 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 TRIM25Q14258 630 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 AGKQ53H12 422 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CLEC4FQ8N1N0 589 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 LZTR1Q8N653 840 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 POC5Q8NA72 575 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 OLIG1Q8TAK6 271 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 ZNF420Q8TAQ5 688 aaPredicted RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 MAGEE2Q8TD90 523 aaPredicted RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 OR52B2Q96RD2 323 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 FRMD8P1Q9BZ68 369 aaPredicted RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 UNKQ9C0B0 810 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 TASP1Q9H6P5 420 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 ANGPTL3Q9Y5C1 460 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 MRPL42Q9Y6G3 142 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 SLC12A8A0AV02 714 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 YJEFN3A6XGL0 299 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 RAD51BO15315 384 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 SNAP91O60641 907 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 PLIN3O60664 434 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 TRIM16O95361 564 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 ADH1AP07327 375 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CAPN1P07384 714 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 PHC1P78364 1004 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 MS4A2Q01362 244 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CEACAM7Q14002 265 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 PHKG1Q16816 387 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 EML3Q32P44 896 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 SMUG1Q53HV7 270 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 C1orf53Q5VUE5 145 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 TRMT10BQ6PF06 316 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 LRRTM3Q86VH5 581 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 PLD3Q8IV08 490 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 EFHD2Q96C19 240 aaPredicted RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 FUBP3Q96I24 572 aaKnown RBP eCLIP10.91□□□□□ -0.66
LSM3-201ENST00000306024 PIWIL1Q96J94 861 aaKnown RBP10.91□□□□□ -0.66
LSM3-201ENST00000306024 CEP295NLQ96MC4 621 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 RAD9AQ99638 391 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 CHID1Q9BWS9 393 aa10.91□□□□□ -0.66
LSM3-201ENST00000306024 C7orf72A4D263 438 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 APOL1O14791 398 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 TRIM13O60858 407 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 LRCH4O75427 683 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 FGF18O76093 207 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 CYP11A1P05108 521 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 IRF1P10914 325 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 CNTFP26441 200 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 SMARCB1Q12824 385 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 TAF10Q12962 218 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 PMS2P3Q13401 168 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 TEX44Q53QW1 395 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 BBS12Q6ZW61 710 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 SLCO6A1Q86UG4 719 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 CHERPQ8IWX8 916 aaKnown RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 CMTR2Q8IYT2 770 aaKnown RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 SFRP1Q8N474 314 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 SLC35B2Q8TB61 432 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 BHMTQ93088 406 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 C9orf16Q9BUW7 83 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 TMLHEQ9NVH6 421 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms