RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ACBD5Q5T8D3 534 aaPredicted RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 PHC3Q8NDX5 983 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 HHIPL1Q96JK4 782 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 NSUN5Q96P11 429 aaKnown RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 VN1R3Q9BXE9 311 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 ERVK-6Q9BXR3 956 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 IKZF3Q9UKT9 509 aa20.05■□□□□ 0.8
VPS53-201ENST00000291074 FNDC3AQ9Y2H6 1198 aaKnown RBP20.05■□□□□ 0.8
VPS53-201ENST00000291074 SMIM24O75264 130 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 SEC24AO95486 1093 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 HSPA1AP0DMV8 641 aaKnown RBP20.04■□□□□ 0.8
VPS53-201ENST00000291074 HSPA1BP0DMV9 641 aaKnown RBP20.04■□□□□ 0.8
VPS53-201ENST00000291074 FMO4P31512 558 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 BFSP2Q13515 415 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 PFKFB4Q16877 469 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 OR52E8Q6IFG1 317 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 GLT6D1Q7Z4J2 308 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 BBS5Q8N3I7 341 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 C2orf15Q8WU43 125 aaKnown RBP20.04■□□□□ 0.8
VPS53-201ENST00000291074 PEX13Q92968 403 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 GIMAP2Q9UG22 337 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 VPS28Q9UK41 221 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 PHF24Q9UPV7 400 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 PCDHGC4Q9Y5F7 938 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 LAMA2P24043 3122 aaKnown RBP20.04■□□□□ 0.8
VPS53-201ENST00000291074 MAGEA13PA6NCF6 341 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 FBP2O00757 339 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 RNASEH1O60930 286 aaKnown RBP20.04■□□□□ 0.8
VPS53-201ENST00000291074 PRLP01236 227 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 RHOCP08134 193 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 MTHFD2P13995 350 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 INHBCP55103 352 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 SH3BP2P78314 561 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 SQLEQ14534 574 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 GRAMD1BQ3KR37 738 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 LPCAT1Q8NF37 534 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 PXYLP1Q8TE99 480 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 NLE1Q9NVX2 485 aaPredicted RBP20.04■□□□□ 0.8
VPS53-201ENST00000291074 MED16Q9Y2X0 877 aa20.04■□□□□ 0.8
VPS53-201ENST00000291074 PSMD12O00232 456 aaPredicted RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 INSIG1O15503 277 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 KDELR3O43731 214 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 GPC4O75487 556 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 STC2O76061 302 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 OGNP20774 298 aaKnown RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 ME2P23368 584 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 SUOXP51687 545 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 FOXA1P55317 472 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 GALNT1Q10472 559 aaPredicted RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 PTK2BQ14289 1009 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 TYSND1Q2T9J0 566 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 SETMARQ53H47 684 aaPredicted RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 HECTD3Q5T447 861 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 LINGO4Q6UY18 593 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 MRPL1Q9BYD6 325 aaKnown RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 RNF38Q9H0F5 515 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 VCXQ9H320 206 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 CREBZFQ9NS37 354 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 ADA2Q9NZK5 511 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 RHOBTB1O94844 696 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 LYNP07948 512 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 NFKB2Q00653 900 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 BTG3Q14201 252 aaPredicted RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 RFTN1Q14699 578 aaPredicted RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 CYTH1Q15438 398 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 GSTA3Q16772 222 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 REP15Q6BDI9 236 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 SLC8B1Q6J4K2 584 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 PAQR3Q6TCH7 311 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 PQLC1Q8N2U9 271 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 PPP2R3CQ969Q6 453 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 KCNA7Q96RP8 456 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 TUBGCP5Q96RT8 1024 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 TMEM175Q9BSA9 504 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 MRPL9Q9BYD2 267 aaKnown RBP20.03■□□□□ 0.8
VPS53-201ENST00000291074 YIPF3Q9GZM5 350 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 SCUBE2Q9NQ36 999 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 GALPQ9UBC7 116 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 PSMD13Q9UNM6 376 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 PCDHGA7Q9Y5G6 932 aa20.03■□□□□ 0.8
VPS53-201ENST00000291074 CDK14O94921 469 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 HMGA1P17096 107 aaKnown RBP20.02■□□□□ 0.8
VPS53-201ENST00000291074 CR2P20023 1033 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 CCL23P55773 120 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 PSME3P61289 254 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 LAMB3Q13751 1172 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 UGT3A2Q3SY77 523 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 MMEL1Q495T6 779 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 RNF220Q5VTB9 566 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 C19orf60Q96EN9 201 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 CAPNS2Q96L46 248 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 ATOH8Q96SQ7 321 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 TRMOQ9BU70 441 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 TDRD1Q9BXT4 1180 aaKnown RBP20.02■□□□□ 0.8
VPS53-201ENST00000291074 CACNA2D2Q9NY47 1150 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 MTRRQ9UBK8 725 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 AGO1Q9UL18 857 aaKnown RBP20.02■□□□□ 0.8
VPS53-201ENST00000291074 C2orf78A6NCI8 922 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 CASQ2O14958 399 aaPredicted RBP20.02■□□□□ 0.8
VPS53-201ENST00000291074 PQBP1O60828 265 aaKnown RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms