RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CFLARO15519 480 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 TGM5O43548 720 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 TBC1D4O60343 1298 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ESRRBO95718 433 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 GLUD1P00367 558 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 IL9P15248 144 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 RBP5P82980 135 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 RELAQ04206 551 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 GALNT1Q10472 559 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 IFRD2Q12894 506 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PUS10Q3MIT2 529 aaKnown RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 INTS6LQ5JSJ4 861 aaKnown RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PMF1Q6P1K2 205 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 LILRA6Q6PI73 481 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 LYSMD3Q7Z3D4 306 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PIWIL4Q7Z3Z4 852 aaKnown RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 BNIPLQ7Z465 357 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 C12orf76Q8N812 135 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 LPGAT1Q92604 370 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 USP13Q92995 863 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 C12orf43Q96C57 262 aaKnown RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 VPS39Q96JC1 886 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SLC45A3Q96JT2 553 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SENP8Q96LD8 212 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ZNF512Q96ME7 567 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CACNA2D2Q9NY47 1150 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 TIMM13Q9Y5L4 95 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 A0A1B0GTW7 788 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PSMD3O43242 534 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 MTSS1O43312 755 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SNAP91O60641 907 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 GABBR2O75899 941 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CD1EP15812 388 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 JUNBP17275 347 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 HOXB8P17481 243 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PSMB4P28070 264 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 OR1D2P34982 312 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ACADSBP45954 432 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 TAF6P49848 677 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 KPNA2P52292 529 aaKnown RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CRADDP78560 199 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 MPP1Q00013 466 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 MTA1Q13330 715 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SLC12A1Q13621 1099 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PRMT9Q6P2P2 845 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 NCCRP1Q6ZVX7 275 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 UNC93AQ86WB7 457 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CAMK1DQ8IU85 385 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CNTN4Q8IWV2 1026 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ZNF567Q8N184 647 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 AFAP1L2Q8N4X5 818 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 APPL2Q8NEU8 664 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ADAMTS19Q8TE59 1207 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 GIPC3Q8TF64 312 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ZNF669Q96BR6 464 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 ROPN1LQ96C74 230 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SLC29A1Q99808 456 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 RHOBTB2Q9BYZ6 727 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 TRIM15Q9C019 465 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SNX25Q9H3E2 840 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 MUC13Q9H3R2 512 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 MEAF6Q9HAF1 191 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 SPAG4Q9NPE6 437 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CCM2LQ9NUG4 571 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-201ENST00000276201 GIN1Q9NXP7 522 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 PACSIN3Q9UKS6 424 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 CROCCQ5TZA2 2017 aa10.34□□□□□ -0.75
UPF3B-201ENST00000276201 BBIP1A8MTZ0 92 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 MAGEB3O15480 346 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 C1RP00736 705 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 PAX3P23760 479 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 STT3AP46977 705 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 IRF9Q00978 393 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 GSTM4Q03013 218 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 PRKCQQ04759 706 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 GALNT2Q10471 571 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 ORC1Q13415 861 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 RAB33AQ14088 237 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 SMAD2Q15796 467 aaKnown RBP10.33□□□□□ -0.76
UPF3B-201ENST00000276201 CTXN3Q4LDR2 81 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 C6orf10Q5SRN2 563 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 REP15Q6BDI9 236 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 NIPAL1Q6NVV3 410 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 ZBTB49Q6ZSB9 765 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 SPRED1Q7Z699 444 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 CLVS1Q8IUQ0 354 aaPredicted RBP10.33□□□□□ -0.76
UPF3B-201ENST00000276201 CCDC117Q8IWD4 279 aaPredicted RBP10.33□□□□□ -0.76
UPF3B-201ENST00000276201 OR2T34Q8NGX1 318 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 OR2T3Q8NH03 318 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 TBC1D15Q8TC07 691 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 SUSD6Q92537 303 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 SLC35B4Q969S0 331 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF560Q96MR9 790 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 CYP2S1Q96SQ9 504 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 HNRNPABQ99729 332 aaKnown RBP10.33□□□□□ -0.76
UPF3B-201ENST00000276201 SLC25A23Q9BV35 468 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 NPLQ9BXD5 320 aaPredicted RBP10.33□□□□□ -0.76
UPF3B-201ENST00000276201 RPF2Q9H7B2 306 aaKnown RBP10.33□□□□□ -0.76
UPF3B-201ENST00000276201 TLK1Q9UKI8 766 aa10.33□□□□□ -0.76
UPF3B-201ENST00000276201 VANGL2Q9ULK5 521 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms