RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 MYBPC3Q14896 1274 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 ZMYND11Q15326 602 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 GALNT5Q7Z7M9 940 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 LPIN3Q9BQK8 851 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 CCDC86Q9H6F5 360 aaKnown RBP11.11□□□□□ -0.63
MSH6-201ENST00000234420 LY9Q9HBG7 655 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 RPS6KA6Q9UK32 745 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 ZNF780BQ9Y6R6 833 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 ABCC2Q92887 1545 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 C1QTNF3-AMACRE9PGA6 284 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 CES2O00748 559 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 KMOO15229 486 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 TSPAN1O60635 241 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 GNRH1P01148 92 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 PNPLA4P41247 253 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 MAGEA8P43361 318 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 SLC7A2P52569 658 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 LAMTOR4Q0VGL1 99 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 AAGABQ6PD74 315 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 GCNT7Q6ZNI0 430 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 ARMC10Q8N2F6 343 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 SLC4A11Q8NBS3 891 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 SPATC1LQ9H0A9 340 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 KCTD5Q9NXV2 234 aa11.11□□□□□ -0.63
MSH6-201ENST00000234420 CLDN25C9JDP6 229 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ADRA1DP25100 572 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 S100A3P33764 101 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 LHX1P48742 406 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ZNF45Q02386 682 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ILDR2Q71H61 639 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 HID1Q8IV36 788 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 DQX1Q8TE96 717 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 HDAC7Q8WUI4 952 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 PTCD3Q96EY7 689 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 BLOC1S4Q9NUP1 217 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 POLR3BQ9NW08 1133 aaPredicted RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 HCN3Q9P1Z3 774 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 EGFL7Q9UHF1 273 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 MUSKO15146 869 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 AP5Z1O43299 807 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 SNX3O60493 162 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 BPNT1O95861 308 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 TLX1P31314 330 aaPredicted RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 AP3M2P53677 418 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 BACE1P56817 501 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 BLMHQ13867 455 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 TRIM40Q6P9F5 258 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 POMKQ9H5K3 350 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 CCDC177Q9NQR7 707 aaPredicted RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 CA14Q9ULX7 337 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 CEP152O94986 1710 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 NPC1L1Q9UHC9 1359 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 H3BSH0 61 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 GADD45AP24522 165 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 PTX3P26022 381 aaPredicted RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 DCDC1P59894 354 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 MAD2L1Q13257 205 aaPredicted RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 PABPC1LQ4VXU2 614 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 TTMPQ5BVD1 217 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 YTHDF3Q7Z739 585 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 TREML1Q86YW5 311 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 METTL6Q8TCB7 284 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 KCNK4Q9NYG8 393 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 AHSPQ9NZD4 102 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 MALT1Q9UDY8 824 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 PCDHB2Q9Y5E7 798 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 U3KQV3 271 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 NEO1Q92859 1461 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ARL5CA6NH57 179 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 B4DGG1 531 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 DDX3YO15523 660 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 COX7A2P14406 83 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 KCNA5P22460 613 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 STOMP27105 288 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 HERVK_113P62684 666 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 PARPBPQ9NWS1 579 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 STARD13Q9Y3M8 1113 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 PLATP00750 562 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 JCHAINP01591 159 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ITGB1P05556 798 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 GALNT3Q14435 633 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ATAT1Q5SQI0 421 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 SSX6Q7RTT6 188 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 GALNT7Q86SF2 657 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 SCUBE3Q8IX30 993 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ELOA2Q8IYF1 753 aaPredicted RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 ARMC5Q96C12 935 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 C12orf43Q96C57 262 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 DNAJA3Q96EY1 480 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 CDK5RAP1Q96SZ6 601 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 RBM22Q9NW64 420 aaKnown RBP eCLIP11.1□□□□□ -0.63
MSH6-201ENST00000234420 TAF6LQ9Y6J9 622 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 CAPN8A6NHC0 703 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 COX4I1P13073 169 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 SP2Q02086 613 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 NFATC2Q13469 925 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 RHEBQ15382 184 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 ACAD10Q6JQN1 1059 aa11.1□□□□□ -0.63
MSH6-201ENST00000234420 PHF10Q8WUB8 498 aaKnown RBP11.1□□□□□ -0.63
MSH6-201ENST00000234420 FATE1Q969F0 183 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms