RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 OR10Q1Q8NGQ4 319 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 OR13C3Q8NGS6 347 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CXorf40AQ8TE69 158 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SETD7Q8WTS6 366 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF354BQ96LW1 612 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM20AQ96MK3 541 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KCTD14Q9BQ13 255 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 HES7Q9BYE0 225 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AMBRA1Q9C0C7 1298 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PRMT8Q9NR22 394 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 EIF3LQ9Y262 564 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF451Q9Y4E5 1061 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SNCAIPQ9Y6H5 919 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LOC102724428A0A0B4J2F2 783 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FTCDNL1E5RQL4 147 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 XKRYO14609 159 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 IPO13O94829 963 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MMP1P03956 469 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ERCC2P18074 760 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CCNA2P20248 432 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LTKP29376 864 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SOAT1P35610 550 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TAF6P49848 677 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PTPN5P54829 565 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SIK1P57059 783 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ELP6Q0PNE2 266 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MKRN4PQ13434 485 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 QPCTQ16769 361 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PLA2G4EQ3MJ16 856 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SERPINA13PQ6UXR4 307 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SYDE1Q6ZW31 735 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DNAJB7Q7Z6W7 309 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PROSER1Q86XN7 944 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZDHHC17Q8IUH5 632 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SYNPOQ8N3V7 929 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRPV1Q8NER1 839 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DNERQ8NFT8 737 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FCGR1BQ92637 280 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CIDECQ96AQ7 238 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ALPK1Q96QP1 1244 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ARNT2Q9HBZ2 717 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAIMQ9NVQ4 179 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SRRDQ9UH36 339 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RFX7Q2KHR2 1363 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM187AA6NFU0 413 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SPAG6O75602 509 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GDF11O95390 407 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NDST3O95803 873 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 IFNA2P01563 188 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CHRNGP07510 517 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NR4A1P22736 598 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ADORA2AP29274 412 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TOB1P50616 345 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRAF2Q12933 501 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRAF3Q13114 568 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CDO1Q16878 200 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SBK1Q52WX2 424 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TNFAIP8L3Q5GJ75 292 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 INTS6LQ5JSJ4 861 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FRMPD2BQ6IN97 320 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PRMT9Q6P2P2 845 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SMARCD3Q6STE5 483 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC70Q7Z2Q7 622 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 VN1R5Q7Z5H4 357 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 EGFL6Q8IUX8 553 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DAGLBQ8NCG7 672 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SETD9Q8NE22 299 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AGBL3Q8NEM8 1001 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 OR4C6Q8NH72 309 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 JADE3Q92613 823 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CLIP3Q96DZ5 547 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LENG8Q96PV6 779 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 EPYCQ99645 322 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RRAGCQ9HB90 399 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CLDND1Q9NY35 253 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF70Q9UC06 446 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC24A2Q9UI40 661 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CPA4Q9UI42 421 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CRLS1Q9UJA2 301 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF225Q9UK10 706 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHGA10Q9Y5H3 936 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RFXAPO00287 272 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NPC1O15118 1278 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF14P17017 642 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CFL1P23528 166 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ARNTP27540 789 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 HSD17B2P37059 387 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AP3S2P59780 193 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GRAPQ13588 217 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CARD17Q5XLA6 110 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CARFQ8N187 725 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GRAPLQ8TC17 118 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRIB2Q92519 343 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ASB2Q96Q27 587 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 C2orf49Q9BVC5 232 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 EXD2Q9NVH0 621 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PTTG2Q9NZH5 202 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KCNN3Q9UGI6 736 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MAFFQ9ULX9 164 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 M0QZ24 198 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms