RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 TEDDM1Q5T9Z0 273 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 NCEH1Q6PIU2 408 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 TXNDC11Q6PKC3 985 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 PACS1Q6VY07 963 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 ADIPOR2Q86V24 386 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 RASSF3Q86WH2 238 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 C12orf40Q86WS4 652 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 CNPY4Q8N129 248 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 C4orf33Q8N1A6 199 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 OR13J1Q8NGT2 312 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 DENND1AQ8TEH3 1009 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 RPL10LQ96L21 214 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 RANBP9Q96S59 729 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 SMC6Q96SB8 1091 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 FAM83CQ9BQN1 747 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 TXNDC16Q9P2K2 825 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 GGT7Q9UJ14 662 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 FBXO10Q9UK96 956 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 CHKBQ9Y259 395 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 KCTD3Q9Y597 815 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 PCDHGC4Q9Y5F7 938 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 CACNA1BQ00975 2339 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 CXorf51AA0A1B0GTR3 108 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TRIM49D1C9J1S8 452 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 AXIN1O15169 862 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 FZD6O60353 706 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SPAG7O75391 227 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 RPP40O75818 363 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 NDST3O95803 873 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PIRTP0C851 137 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SRCP12931 536 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 KRT4P19013 534 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PAMP19021 973 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SERPINB9P50453 376 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 GNGT1P63211 74 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC20A2Q08357 652 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SEPT6Q14141 434 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PDGFRLQ15198 375 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 DHCR24Q15392 516 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 CNGA3Q16281 694 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TMEM196Q5HYL7 178 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 RALGPS1Q5JS13 557 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PDPK2PQ6A1A2 396 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 Q6ZS52 159 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 KCNMB4Q86W47 210 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 BANPQ8N9N5 519 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TTC8Q8TAM2 541 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 OSCP1Q8WVF1 389 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ZFYVE19Q96K21 471 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 KLF6Q99612 283 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TM6SF2Q9BZW4 377 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ARRDC1-AS1Q9H2J1 176 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 KCNK9Q9NPC2 374 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 C20orf96Q9NUD7 363 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 DUS2Q9NX74 493 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 GGA2Q9UJY4 613 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ANGPTL2Q9UKU9 493 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 HS3ST2Q9Y278 367 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SPO11Q9Y5K1 396 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 GOLGA8RI6L899 631 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TRAFD1O14545 582 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TM4SF5O14894 197 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 AURKAO14965 403 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SNPHO15079 494 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PRPF4O43172 522 aaKnown RBP eCLIP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 RHOBTB1O94844 696 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ALDOAP04075 364 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SNRPAP09012 282 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PABPC1P11940 636 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ARSAP15289 507 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 CA4P22748 312 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 CNTFP26441 200 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 GABRB3P28472 473 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 GKP32189 559 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 LSP1P33241 339 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 RPA3P35244 121 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ARSDP51689 593 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 WDR4P57081 412 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SHC2P98077 582 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ACVR1Q04771 509 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC18A2Q05940 514 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SRSF5Q13243 272 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 LAMB3Q13751 1172 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 PTPRCAPQ14761 206 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 GEN1Q17RS7 908 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 TSTD2Q5T7W7 516 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 CDHR3Q6ZTQ4 885 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 C11orf74Q86VG3 221 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 CNTN4Q8IWV2 1026 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 NAT16Q8N8M0 369 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 ACVR1CQ8NER5 493 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 OR6K2Q8NGY2 324 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 MTBPQ96DY7 904 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 MYO19Q96H55 970 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC2A11Q9BYW1 496 aa9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 C12orf65Q9H3J6 166 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SSU72Q9NP77 194 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC25A13Q9UJS0 675 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms