RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SEPT8Q92599 483 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 MYLPFQ96A32 169 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ISOC1Q96CN7 298 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 DACH2Q96NX9 599 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 FAM8A1Q9UBU6 413 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 RBMX2Q9Y388 322 aaKnown RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 NRAPQ86VF7 1730 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZNF195O14628 629 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 SLC22A2O15244 555 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 SNAP91O60641 907 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 GUCA1CO95843 209 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CDH3P22223 829 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CD68P34810 354 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 CLK1P49759 484 aaKnown RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZNF280AP59817 542 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 NRG1Q02297 640 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 DSC2Q02487 901 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZBED5Q49AG3 693 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 MILR1Q7Z6M3 343 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZCCHC7Q8N3Z6 543 aaKnown RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 FIBCD1Q8N539 461 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.61□□□□□ -0.395e-11■■■■■ 94.1
LIG1-221ENST00000613670 SLC45A3Q96JT2 553 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 COX4I2Q96KJ9 171 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ACOX2Q99424 681 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 SLC39A8Q9C0K1 460 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 KIF17Q9P2E2 1029 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 TRMT6Q9UJA5 497 aaKnown RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 PRG3Q9Y2Y8 225 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 COQ6Q9Y2Z9 468 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CROCCQ5TZA2 2017 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 COL2A1P02458 1487 aaPredicted RBP12.6□□□□□ -0.39
LIG1-221ENST00000613670 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.6□□□□□ -0.39
LIG1-221ENST00000613670 PLOD2O00469 737 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 TTKP33981 857 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 VAC14Q08AM6 782 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SPIDRQ14159 915 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 GALNT3Q14435 633 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 CARTPTQ16568 116 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 EXOC2Q96KP1 924 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 TMEM74Q96NL1 305 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 HOPXQ9BPY8 73 aaPredicted RBP12.6□□□□□ -0.39
LIG1-221ENST00000613670 ALG2Q9H553 416 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SPON1Q9HCB6 807 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SMOXQ9NWM0 555 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.6□□□□□ -0.392e-6■■■■□ 22.1
LIG1-221ENST00000613670 IPPQ9Y573 584 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 PCDHGA7Q9Y5G6 932 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 LRRC14BA6NHZ5 514 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 TTC36A6NLP5 189 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SLC2A4P14672 509 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 BEX3Q00994 111 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 C10orf120Q5SQS8 335 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 BROXQ5VW32 411 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 ATG14Q6ZNE5 492 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SCAMP5Q8TAC9 235 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 HM13Q8TCT9 377 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 CDCA5Q96FF9 252 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 RAD21L1Q9H4I0 556 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 LATS2Q9NRM7 1088 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 CEPT1Q9Y6K0 416 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 PRSS51A0A1B0GVH4 220 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 DCLK1O15075 740 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SH3BP5O60239 455 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 FKBP9O95302 570 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 PRKCGP05129 697 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 DARSP14868 501 aaKnown RBP12.6□□□□□ -0.39
LIG1-221ENST00000613670 KCNA5P22460 613 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 ALDH4A1P30038 563 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 CA8P35219 290 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 BRCC3P46736 316 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 ARHGAP1Q07960 439 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 BNIP2Q12982 314 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 ZNF789Q5FWF6 425 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 DCLRE1AQ6PJP8 1040 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 FKBP9P1Q75LS8 142 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 ERMP1Q7Z2K6 904 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 C8orf59Q8N0T1 100 aaPredicted RBP12.6□□□□□ -0.39
LIG1-221ENST00000613670 SEMA3CQ99985 751 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 TRIM62Q9BVG3 475 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 SENP6Q9GZR1 1112 aaPredicted RBP12.6□□□□□ -0.39
LIG1-221ENST00000613670 RBPJLQ9UBG7 517 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 ATP11BQ9Y2G3 1177 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 NUP205Q92621 2012 aa12.6□□□□□ -0.39
LIG1-221ENST00000613670 H0Y626 953 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 TNPO2O14787 897 aaKnown RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 ONECUT3O60422 494 aaPredicted RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 GABBR2O75899 941 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 TRIM16O95361 564 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 HLA-DQB2P05538 268 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 ALOX15P16050 662 aaPredicted RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 PTPRCAPQ14761 206 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 PSMD5Q16401 504 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 GLYATQ6IB77 296 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 IL27RAQ6UWB1 636 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 PPP1R2P1Q96PQ5 205 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 RUBCNLQ9H714 662 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 SYTL2Q9HCH5 934 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 KCTD3Q9Y597 815 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 ARPC2O15144 300 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms