RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 LOXL2Q9Y4K0 774 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 A0A0U1RQS6 177 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 PRSS38A1L453 326 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 PDE2AO00408 941 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 NOBOXO60393 691 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 VIPR1P32241 457 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 GJC1P36383 396 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 ETV3P41162 512 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 PPM1FP49593 454 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 MAZP56270 477 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 KRT81Q14533 505 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 TGIF1Q15583 401 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 NFKBIBQ15653 356 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 CNGA3Q16281 694 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 C14orf28Q4W4Y0 310 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 BOLA3Q53S33 107 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 CERCAMQ5T4B2 595 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 TXNRD3NBQ6F5E7 133 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 CAVIN1Q6NZI2 390 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 HSD11B1LQ7Z5J1 315 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 POLNQ7Z5Q5 900 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 CLEC14AQ86T13 490 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 HEATR4Q86WZ0 1026 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 PSTKQ8IV42 348 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 CPLX3Q8WVH0 158 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 COQ10AQ96MF6 247 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 ZNF599Q96NL3 588 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 NT5MQ9NPB1 228 aa17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 PHPT1Q9NRX4 125 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-223ENST00000600552 TNFRSF10CO14798 259 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 MYBL1P10243 752 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 RARAP10276 462 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 CYP2A6P11509 494 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 PLA2G2AP14555 144 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 GLB1P16278 677 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 ITIH1P19827 911 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 ALDH4A1P30038 563 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 PCK1P35558 622 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 PRKCIP41743 596 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 MMP13P45452 471 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 POLD2P49005 469 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 ZNF165P49910 485 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 ZNF135P52742 658 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 OR1D5P58170 312 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 TRAF2Q12933 501 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 MAP9Q49MG5 647 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 RAET1GQ6H3X3 334 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 USP53Q70EK8 1073 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 ZDHHC1Q8WTX9 485 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 CSPG4P5Q96PW8 444 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 NUDCD1Q96RS6 583 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 CCNL2Q96S94 520 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 BPIFA3Q9BQP9 254 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 SEMA4CQ9C0C4 833 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 RDH14Q9HBH5 336 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 SPATS2LQ9NUQ6 558 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 CD84Q9UIB8 345 aa17.59■□□□□ 0.41
SHKBP1-223ENST00000600552 A0A1W2PQC6 194 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 RHPN2P1A8MT19 583 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 K7ENP7 123 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 KALRNO60229 2985 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 HEXIM1O94992 359 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 MYCLP1P12525 358 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 NFKBIAP25963 317 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 AK4P27144 223 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 TRIM23P36406 574 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 MMRN1Q13201 1228 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 SRSF6Q13247 344 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 DPYSL2Q16555 572 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 TSR1Q2NL82 804 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 MARC1Q5VT66 337 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 INO80CQ6PI98 192 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 OGFOD3Q6PK18 319 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 SLC30A9Q6PML9 568 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 RFLNAQ6ZTI6 216 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 Q6ZVL8 140 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 SPRED1Q7Z699 444 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 TSPAN33Q86UF1 283 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 PTCD2Q8WV60 388 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 SMIM14Q96QK8 99 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 SEMA6CQ9H3T2 930 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 PCDH18Q9HCL0 1135 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 PHTF1Q9UMS5 762 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 TTLL3Q9Y4R7 772 aa17.58■□□□□ 0.4
SHKBP1-223ENST00000600552 A0A1B0GTH6 734 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 NPIPB15A6NHN6 443 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 PYCARD-AS1I3L0S3 204 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 HTRA2O43464 458 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 MAFKO60675 156 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 SOCS5O75159 536 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 HOXC4P09017 264 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 CCNB1P14635 433 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 HSPA9P38646 679 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 ETV5P41161 510 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 MLLT3P42568 568 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 CDH6P55285 790 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 SKOR1P84550 965 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 ILF3Q12906 894 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 EIF3IQ13347 325 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 HLTFQ14527 1009 aaKnown RBP eCLIP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms