RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 HNRNPLLQ8WVV9 542 aaKnown RBP16.22■□□□□ 0.19
LSM4-206ENST00000600289 TEKT5Q96M29 485 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 COQ10AQ96MF6 247 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 LYSMD1Q96S90 227 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 VAT1Q99536 393 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 CDC6Q99741 560 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 HERPUD2Q9BSE4 406 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 PCDH9Q9HC56 1237 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 MBNL1Q9NR56 388 aaKnown RBP16.22■□□□□ 0.19
LSM4-206ENST00000600289 COQ6Q9Y2Z9 468 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 TTLL3Q9Y4R7 772 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 MYO18BQ8IUG5 2567 aa16.22■□□□□ 0.19
LSM4-206ENST00000600289 CAPN8A6NHC0 703 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 NPIPB15A6NHN6 443 aaPredicted RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 LZTS3O60299 673 aaPredicted RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 ZNF189O75820 626 aaPredicted RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 RECQL5O94762 991 aaPredicted RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 PRLP01236 227 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 PYGMP11217 842 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 NME1P15531 152 aaKnown RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 ZNF30P17039 623 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 LHCGRP22888 699 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 PTPN3P26045 913 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 SIM1P81133 766 aaPredicted RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 IL9RQ01113 521 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 WASHC5Q12768 1159 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 PTK2BQ14289 1009 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 FZD2Q14332 565 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 ESRP1Q6NXG1 681 aaKnown RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 MACC1Q6ZN28 852 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 SETD7Q8WTS6 366 aaKnown RBP16.21■□□□□ 0.19
LSM4-206ENST00000600289 TBATAQ96M53 351 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 CAMK1GQ96NX5 476 aa16.21■□□□□ 0.19
LSM4-206ENST00000600289 TJP3O95049 919 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 FTCDO95954 541 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 CSF2P04141 144 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 ITGAVP06756 1048 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 HOXC4P09017 264 aaPredicted RBP16.2■□□□□ 0.18
LSM4-206ENST00000600289 TEAD1P28347 426 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 CD86P42081 329 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 SEMG2Q02383 582 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 C19orf57Q0VDD7 668 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 PDE1CQ14123 709 aaPredicted RBP16.2■□□□□ 0.18
LSM4-206ENST00000600289 LLGL1Q15334 1064 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 TRIP6Q15654 476 aaKnown RBP16.2■□□□□ 0.18
LSM4-206ENST00000600289 PRAMEF14Q5SWL7 426 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 RAB44Q7Z6P3 723 aaPredicted RBP16.2■□□□□ 0.18
LSM4-206ENST00000600289 RHBDD1Q8TEB9 315 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 HTR3CQ8WXA8 447 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 AGAP3Q96P47 875 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 TRIB3Q96RU7 358 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 HEMGNQ9BXL5 484 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 CEP41Q9BYV8 373 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 GLOD4Q9HC38 313 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 BTBD3Q9Y2F9 522 aa16.2■□□□□ 0.18
LSM4-206ENST00000600289 ZNF106Q9H2Y7 1883 aaKnown RBP16.2■□□□□ 0.18
LSM4-206ENST00000600289 PIAS2O75928 621 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 HNF1BP35680 557 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 TRIM23P36406 574 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 THOP1P52888 689 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 HNRNPKP61978 463 aaKnown RBP eCLIP16.19■□□□□ 0.185e-6■□□□□ 11.2
LSM4-206ENST00000600289 OTUD4Q01804 1114 aaKnown RBP16.19■□□□□ 0.18
LSM4-206ENST00000600289 BNIP3Q12983 259 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 KLF1Q13351 362 aaPredicted RBP16.19■□□□□ 0.18
LSM4-206ENST00000600289 TPRG1LQ5T0D9 272 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 ZC3H18Q86VM9 953 aaKnown RBP16.19■□□□□ 0.18
LSM4-206ENST00000600289 LURAP1LQ8IV03 231 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 ACTL9Q8TC94 416 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 HAUS1Q96CS2 278 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 DTD2Q96FN9 168 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 ADGRE3Q9BY15 652 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 SEPT10Q9P0V9 454 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 TRHDEQ9UKU6 1024 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 GUCA1BQ9UMX6 200 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 CHKBQ9Y259 395 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 ZNF462Q96JM2 2506 aa16.19■□□□□ 0.18
LSM4-206ENST00000600289 ARID1BQ8NFD5 2236 aaPredicted RBP16.19■□□□□ 0.18
LSM4-206ENST00000600289 UNC79Q9P2D8 2635 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 ANKRD66B4E2M5 251 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 H3BM21 787 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 DKK1O94907 266 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 TRIM16O95361 564 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 ALPIP09923 528 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 PLA2G2AP14555 144 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 CTPS1P17812 591 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 DGKAP23743 735 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 CD68P34810 354 aaPredicted RBP16.18■□□□□ 0.18
LSM4-206ENST00000600289 EPHB1P54762 984 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 KIAA1024LP59773 190 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 DPTQ07507 201 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 EIF2B5Q13144 721 aaKnown RBP16.18■□□□□ 0.18
LSM4-206ENST00000600289 ARHGEF7Q14155 803 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 INPP5AQ14642 412 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 NFATC4Q14934 902 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 ACOX1Q15067 660 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 CCDC181Q5TID7 509 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 LRRC66Q68CR7 880 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 AADACL2Q6P093 401 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 CRTC1Q6UUV9 634 aa16.18■□□□□ 0.18
LSM4-206ENST00000600289 ZNF765Q7L2R6 523 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms