RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MRNIPQ6NTE8 343 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 LILRA6Q6PI73 481 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 NCEH1Q6PIU2 408 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 TPGS1Q6ZTW0 290 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 ISCA2Q86U28 154 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 PIANPQ8IYJ0 282 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 KDM1BQ8NB78 822 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 GABPB2Q8TAK5 448 aaPredicted RBP14.48□□□□□ -0.09
VRK3-217ENST00000599538 MCUR1Q96AQ8 359 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 FAM96AQ9H5X1 160 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 CXXC1Q9P0U4 656 aaPredicted RBP14.48□□□□□ -0.09
VRK3-217ENST00000599538 CFAP97Q9P2B7 532 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 G3BP2Q9UN86 482 aaKnown RBP14.48□□□□□ -0.09
VRK3-217ENST00000599538 MED16Q9Y2X0 877 aa14.48□□□□□ -0.09
VRK3-217ENST00000599538 LOC100653049A0A140TA62 436 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 SPECC1L-ADORA2AF8WAN1 911 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 HDAC3O15379 428 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 KRT34O76011 436 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 CXCL14O95715 111 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 CRTAMO95727 393 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 C8AP07357 584 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 ARSAP15289 507 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 CPOXP36551 454 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 TAF1AQ15573 450 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 TYSND1Q2T9J0 566 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 ACCSLQ4AC99 568 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 KHDC1Q4VXA5 237 aaKnown RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 PABPC1LQ4VXU2 614 aaKnown RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 SETMARQ53H47 684 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 FAM45BPQ6NSW5 357 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 ITIH5Q86UX2 942 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 TMPRSS6Q8IU80 811 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 LMNTD2Q8IXW0 634 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 HJURPQ8NCD3 748 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 FAM45AQ8TCE6 357 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 EID2BQ96D98 161 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 TSPAN17Q96FV3 270 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 HCFC1R1Q9NWW0 138 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 DNMT3BQ9UBC3 853 aaKnown RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 FKBPLQ9UIM3 349 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 ARIH1Q9Y4X5 557 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 UBA6A0AVT1 1052 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 H0Y3Z8 333 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 H3BMM5 538 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 PMLP29590 882 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 CDC25CP30307 473 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 GKP32189 559 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 PPM1AP35813 382 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 PGM1P36871 562 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 CCR2P41597 374 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 ERVFC1P60507 584 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 RHOAP61586 193 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 SLC25A3Q00325 362 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 NSUN2Q08J23 767 aaKnown RBP eCLIP14.47□□□□□ -0.09
VRK3-217ENST00000599538 PRKAA1Q13131 559 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 KPNB1Q14974 876 aaKnown RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 ACAP2Q15057 778 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 PDCD2Q16342 344 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 LSM12Q3MHD2 195 aaKnown RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 TMEM198Q66K66 360 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 SEL1L3Q68CR1 1132 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 PSAPL1Q6NUJ1 521 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 MFN1Q8IWA4 741 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 FAM217AQ8IXS0 508 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 RYBPQ8N488 228 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 TMEM199Q8N511 208 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 DDI1Q8WTU0 396 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 TCF7L2Q9NQB0 619 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.47□□□□□ -0.09
VRK3-217ENST00000599538 POLR3BQ9NW08 1133 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 GALPQ9UBC7 116 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 RIMKLBQ9ULI2 386 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 SORCS3Q9UPU3 1222 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.47□□□□□ -0.09
VRK3-217ENST00000599538 PCDHB9Q9Y5E1 797 aa14.47□□□□□ -0.09
VRK3-217ENST00000599538 HIDE1A8MVS5 230 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 WFS1O76024 890 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 IPO13O94829 963 aaKnown RBP14.46□□□□□ -0.09
VRK3-217ENST00000599538 LATS1O95835 1130 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 TSPAN8P19075 237 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 CCND1P24385 295 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 FMO4P31512 558 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 ERFP50548 548 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 PRKAA2P54646 552 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 LAMB3Q13751 1172 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 SPRED2Q7Z698 418 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 RIN3Q8TB24 985 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 SCG3Q8WXD2 468 aaKnown RBP14.46□□□□□ -0.09
VRK3-217ENST00000599538 MRPS31Q92665 395 aaKnown RBP14.46□□□□□ -0.09
VRK3-217ENST00000599538 AARSD1Q9BTE6 412 aaKnown RBP14.46□□□□□ -0.09
VRK3-217ENST00000599538 SLC46A2Q9BY10 475 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 NCKIPSDQ9NZQ3 722 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 IKZF3Q9UKT9 509 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 FAM50BQ9Y247 325 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 FIS1Q9Y3D6 152 aa14.46□□□□□ -0.09
VRK3-217ENST00000599538 LCHNA4D1U4 455 aa14.45□□□□□ -0.1
VRK3-217ENST00000599538 CCL16O15467 120 aa14.45□□□□□ -0.1
VRK3-217ENST00000599538 OR1I1O60431 355 aa14.45□□□□□ -0.1
VRK3-217ENST00000599538 LRG1P02750 347 aa14.45□□□□□ -0.1
VRK3-217ENST00000599538 ALPIP09923 528 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms