RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 C14orf28Q4W4Y0 310 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 TAF1BQ53T94 588 aaPredicted RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 CCDC122Q5T0U0 273 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 ARMC12Q5T9G4 340 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 ARHGAP40Q5TG30 622 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 KCTD16Q68DU8 428 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 TXNRD3NBQ6F5E7 133 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 RAET1GQ6H3X3 334 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 TIGD7Q6NT04 549 aaPredicted RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 ALKBH5Q6P6C2 394 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 NYAP1Q6ZVC0 841 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 HEATR4Q86WZ0 1026 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 LRRC49Q8IUZ0 686 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 CCNJLQ8IV13 435 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 NDUFAF2Q8N183 169 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 PGBD5Q8N414 524 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 Q8N9G6 341 aaPredicted RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 LSM14AQ8ND56 463 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 GPR156Q8NFN8 814 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 ZNF564Q8TBZ8 553 aaPredicted RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 COQ10AQ96MF6 247 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 LGR4Q9BXB1 951 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 TMEM168Q9H0V1 697 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 LRRN3Q9H3W5 708 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 SUDS3Q9H7L9 328 aaPredicted RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 CARS2Q9HA77 564 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 CPNE5Q9HCH3 593 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 NT5MQ9NPB1 228 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 RABGEF1Q9UJ41 708 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 CAPN11Q9UMQ6 739 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 LUC7L2Q9Y383 392 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 LRRK1Q38SD2 2015 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 ANKRD36A6QL64 1941 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 LRP4O75096 1905 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 DSPP15924 2871 aaKnown RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 A0A087X0T9 212 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 A0A1W2PNU3 283 aaPredicted RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 NPIPB15A6NHN6 443 aaPredicted RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 ERVH48-1M5A8F1 160 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 CASC3O15234 703 aaKnown RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 PGLSO95336 258 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 TPM3P06753 285 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 JMJD7P0C870 316 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 FAM228BP0C875 321 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 PNLIPP16233 465 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 CCKBRP32239 447 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 PBX1P40424 430 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 ETV3P41162 512 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 EPHB1P54762 984 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 CDK3Q00526 305 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 RHDQ02161 417 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 ILF3Q12906 894 aaKnown RBP eCLIP9.8□□□□□ -0.84
VRK3-216ENST00000599342 TRAF2Q12933 501 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 BIRC2Q13490 618 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 CERCAMQ5T4B2 595 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 ZFYVE27Q5T4F4 411 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 SPECC1LQ69YQ0 1117 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 RAB11FIP2Q7L804 512 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 B3GNT8Q7Z7M8 397 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 JAMLQ86YT9 394 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 FBXO39Q8N4B4 442 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 DTD2Q96FN9 168 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 PRR11Q96HE9 360 aaPredicted RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 NSMCE3Q96MG7 304 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 GSDMCQ9BYG8 508 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 FOXP3Q9BZS1 431 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 POLR1EQ9GZS1 481 aaKnown RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 WDR70Q9NW82 654 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 LRIT1Q9P2V4 623 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 APPL1Q9UKG1 709 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 TTLL3Q9Y4R7 772 aa9.8□□□□□ -0.84
VRK3-216ENST00000599342 COL27A1Q8IZC6 1860 aaPredicted RBP9.8□□□□□ -0.84
VRK3-216ENST00000599342 A0A1W2PQM1 296 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 PMS2P1A4D2B8 440 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 ZW10O43264 779 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 NUDT21O43809 227 aaKnown RBP9.79□□□□□ -0.84
VRK3-216ENST00000599342 MFSD11O43934 449 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 NOBOXO60393 691 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 PRB1P04280 392 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 GYPCP04921 128 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CD48P09326 243 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CCNB1P14635 433 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CTPS1P17812 591 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CA4P22748 312 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 LHCGRP22888 699 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 GARSP41250 739 aaKnown RBP9.79□□□□□ -0.84
VRK3-216ENST00000599342 GPR1P46091 355 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 GNPDA1P46926 289 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 VAC14Q08AM6 782 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 MMRN1Q13201 1228 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 PEX6Q13608 980 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 HLTFQ14527 1009 aaKnown RBP eCLIP9.79□□□□□ -0.84
VRK3-216ENST00000599342 ZSCAN23Q3MJ62 389 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 MAP9Q49MG5 647 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 NCBP2-AS2Q69YL0 99 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 OGFOD3Q6PK18 319 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 Q6ZVL8 140 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 HSD11B1LQ7Z5J1 315 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 SPRED1Q7Z699 444 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms