RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 KYAT3Q6YP21 454 aaKnown RBP14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 USP45Q70EL2 814 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 SLC25A41Q8N5S1 370 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 DENND6BQ8NEG7 585 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 IPMKQ8NFU5 416 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 NETO1Q8TDF5 533 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 PBKQ96KB5 322 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 AGAP2Q99490 1192 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 APOL2Q9BQE5 337 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 ZDHHC5Q9C0B5 715 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 CD84Q9UIB8 345 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 KLF15Q9UIH9 416 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 TTC7AQ9ULT0 858 aaPredicted RBP14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 DOCK9Q9BZ29 2069 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 LAMA1P25391 3075 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 A6NNZ2 444 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 FPGTO14772 594 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 SLC30A4O14863 429 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 OPHN1O60890 802 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 USP12O75317 370 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 PCCBP05166 539 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 CA4P22748 312 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 MSLNQ13421 630 aaPredicted RBP14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 ZNF542PQ5EBM4 170 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 KCTD11Q693B1 232 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 DRICH1Q6PGQ1 229 aaPredicted RBP14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 RANBP10Q6VN20 620 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 LYSMD3Q7Z3D4 306 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 PTAR1Q7Z6K3 402 aaPredicted RBP14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 SCAMP4Q969E2 229 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 DTD2Q96FN9 168 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 IFT43Q96FT9 208 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 ELF4Q99607 663 aaPredicted RBP14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 FICDQ9BVA6 458 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 AP1M1Q9BXS5 423 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 ADGRE3Q9BY15 652 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 FRMD8P1Q9BZ68 369 aaPredicted RBP14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 ABCG8Q9H221 673 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 DLL3Q9NYJ7 618 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 SHOC2Q9UQ13 582 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 ZNF148Q9UQR1 794 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 DRG1Q9Y295 367 aaKnown RBP14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 OR1A2Q9Y585 309 aa14.21□□□□□ -0.13
SHKBP1-217ENST00000598558 CFAP54Q96N23 3096 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 A0A1B0GTQ1 180 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 DCDC2BA2VCK2 349 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 SOD1P00441 154 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 EPOP01588 193 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 ITGAVP06756 1048 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 STIP1P31948 543 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 RPL22P35268 128 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 ATXN3P54252 364 aaPredicted RBP14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 GEMP55040 296 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 OVGP1Q12889 678 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 EIF2B5Q13144 721 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 MPP3Q13368 585 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 ARHGEF7Q14155 803 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 SLC1A5Q15758 541 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 PARP6Q2NL67 630 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 PAPD7Q5XG87 772 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 ITPRIPL1Q6GPH6 555 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 PNCKQ6P2M8 343 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 DBX2Q6ZNG2 339 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 MICALCLQ6ZW33 695 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 KANSL1Q7Z3B3 1105 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 TMC3Q7Z5M5 1100 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 TTC30BQ8N4P2 665 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 CAMK1GQ96NX5 476 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 APOOQ9BUR5 198 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 LGR4Q9BXB1 951 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 MAGEE1Q9HCI5 957 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 GDF3Q9NR23 364 aa14.2□□□□□ -0.14
SHKBP1-217ENST00000598558 C1orf232A0A0U1RR37 186 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 SPTY2D1-AS1A0A0U1RR47 76 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 PSMD11O00231 422 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ANXA9O76027 345 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 STK10O94804 968 aaKnown RBP14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 IFNB1P01574 187 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 TRIM23P36406 574 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 RABIFP47224 123 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 RXRGP48443 463 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 PDE1CQ14123 709 aaPredicted RBP14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 PTPRCAPQ14761 206 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 IL27RAQ6UWB1 636 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ARHGEF18Q6ZSZ5 1173 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 PIP4P1Q86T03 277 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 GATAD2AQ86YP4 633 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 NDUFAF2Q8N183 169 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ACTRT1Q8TDG2 376 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 NUS1Q96E22 293 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 TCEAL2Q9H3H9 227 aaPredicted RBP14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ERVMER34-1Q9H9K5 563 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ETNK1Q9HBU6 452 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 TM7SF3Q9NS93 570 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 BTBD3Q9Y2F9 522 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ZNF711Q9Y462 761 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 ADAMTS9Q9P2N4 1935 aa14.19□□□□□ -0.14
SHKBP1-217ENST00000598558 DMXL1Q9Y485 3027 aa14.18□□□□□ -0.14
SHKBP1-217ENST00000598558 ANKRD36A6QL64 1941 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms