RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 RALGDSQ12967 914 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 PAK1Q13153 545 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 CDO1Q16878 200 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 PARP15Q460N3 678 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 PNCKQ6P2M8 343 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 C16orf46Q6P387 395 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 SLC30A9Q6PML9 568 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 LIPIQ6XZB0 460 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 ASB18Q6ZVZ8 466 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 ZSWIM9Q86XI8 627 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 CCDC13Q8IYE1 715 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 TIGD1Q96MW7 591 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 SPRY4Q9C004 299 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 NOL6Q9H6R4 1146 aaKnown RBP10.14□□□□□ -0.79
TRIM28-210ENST00000597618 ATP13A3Q9H7F0 1226 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 SUDS3Q9H7L9 328 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-210ENST00000597618 GDPD2Q9HCC8 539 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 PHPT1Q9NRX4 125 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-210ENST00000597618 CUEDC1Q9NWM3 386 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-210ENST00000597618 TMEM9Q9P0T7 183 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 PDP2Q9P2J9 529 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 UBA2Q9UBT2 640 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-210ENST00000597618 ZDHHC9Q9Y397 364 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 TMEM184BQ9Y519 407 aaPredicted RBP10.14□□□□□ -0.79
TRIM28-210ENST00000597618 KCNMB2Q9Y691 235 aa10.14□□□□□ -0.79
TRIM28-210ENST00000597618 RASA4BC9J798 803 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 FOXN3O00409 490 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PPM1DO15297 605 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 TEX33O43247 280 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 RASA4O43374 803 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 RFPL1O75677 317 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 STK17BO94768 372 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 CEACAM5P06731 702 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PNMA6AP0CW24 399 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 NR1D1P20393 614 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 GNLYP22749 145 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 AK4P27144 223 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PON1P27169 355 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 ERCC5P28715 1186 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 SDC4P31431 198 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 STAT5AP42229 794 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 GNPDA1P46926 289 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PPM1FP49593 454 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 STX17P56962 302 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 MAP7Q14244 749 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 CYTH1Q15438 398 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 C2CD6Q53TS8 623 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 ATP1A1-AS1Q5TC04 95 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 AFMIDQ63HM1 303 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 DPPA4Q7L190 304 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 STRADAQ7RTN6 431 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 CAMK1DQ8IU85 385 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 FAM71AQ8IYT1 594 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 NAGSQ8N159 534 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 ESX1Q8N693 406 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 EMC1Q8N766 993 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PAF1Q8N7H5 531 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 OR10G6Q8NH81 332 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PATE1Q8WXA2 126 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 AHCYL2Q96HN2 611 aaKnown RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 CTRCQ99895 268 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 KLC2Q9H0B6 622 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 FBXO8Q9NRD0 319 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 METTL5Q9NRN9 209 aaKnown RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 DNAJC12Q9UKB3 198 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 AJAP1Q9UKB5 411 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 PCDHB3Q9Y5E6 796 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 CSMD1Q96PZ7 3565 aa10.13□□□□□ -0.79
TRIM28-210ENST00000597618 ARHGEF17Q96PE2 2063 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-210ENST00000597618 ANKRD36A6QL64 1941 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 FAM170AA1A519 330 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 TTLL8A6PVC2 850 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 K7EM74 188 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 BUB1BO60566 1050 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-210ENST00000597618 DDAH2O95865 285 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 DLGAP3O95886 979 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 CYP11B1P15538 503 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 GM2AP17900 193 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 EPHB2P29323 1055 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 PTPN9P43378 593 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 CSNK1DP48730 415 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 POLR2LP62875 67 aaKnown RBP10.12□□□□□ -0.79
TRIM28-210ENST00000597618 CTBSQ01459 385 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 ACOX1Q15067 660 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 C15orf59Q2T9L4 293 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-210ENST00000597618 CCDC14Q49A88 953 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 RAB6CQ53S08 254 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 WDR74Q6RFH5 385 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-210ENST00000597618 TIPARPQ7Z3E1 657 aaKnown RBP10.12□□□□□ -0.79
TRIM28-210ENST00000597618 PELI3Q8N2H9 469 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 CCDC185Q8N715 623 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 CPT1CQ8TCG5 803 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 RXFP2Q8WXD0 754 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 NTAN1Q96AB6 310 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 ECHDC3Q96DC8 303 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 NUS1Q96E22 293 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 TEX101Q9BY14 249 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 FRMD8Q9BZ67 464 aaPredicted RBP10.12□□□□□ -0.79
TRIM28-210ENST00000597618 RAB6CQ9H0N0 254 aa10.12□□□□□ -0.79
TRIM28-210ENST00000597618 SIX2Q9NPC8 291 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms