RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 APOOQ9BUR5 198 aa15.04■□□□□ -0
UPF1-202ENST00000594243 TLR10Q9BXR5 811 aa15.04■□□□□ -0
UPF1-202ENST00000594243 USP29Q9HBJ7 922 aa15.04■□□□□ -0
UPF1-202ENST00000594243 UBP1Q9NZI7 540 aa15.04■□□□□ -0
UPF1-202ENST00000594243 AAR2Q9Y312 384 aaKnown RBP15.04■□□□□ -0
UPF1-202ENST00000594243 JRKLQ9Y4A0 524 aa15.04■□□□□ -0
UPF1-202ENST00000594243 NCOR2Q9Y618 2525 aa15.04■□□□□ -0
UPF1-202ENST00000594243 TRPM6Q9BX84 2022 aa15.04■□□□□ -0
UPF1-202ENST00000594243 SPTBN2O15020 2390 aa15.03■□□□□ -0
UPF1-202ENST00000594243 LOC285095A0A1B0GVY8 99 aa15.03■□□□□ -0
UPF1-202ENST00000594243 C5orf60A6NFR6 353 aa15.03■□□□□ -0
UPF1-202ENST00000594243 H3BM21 787 aa15.03■□□□□ -0
UPF1-202ENST00000594243 ANXA9O76027 345 aa15.03■□□□□ -0
UPF1-202ENST00000594243 CLDN7O95471 211 aa15.03■□□□□ -0
UPF1-202ENST00000594243 NDST3O95803 873 aa15.03■□□□□ -0
UPF1-202ENST00000594243 CSF2P04141 144 aa15.03■□□□□ -0
UPF1-202ENST00000594243 GM2AP17900 193 aa15.03■□□□□ -0
UPF1-202ENST00000594243 EPHA8P29322 1005 aaPredicted RBP15.03■□□□□ -0
UPF1-202ENST00000594243 STIP1P31948 543 aaKnown RBP15.03■□□□□ -0
UPF1-202ENST00000594243 PI4KAP42356 2102 aa15.03■□□□□ -0
UPF1-202ENST00000594243 HNRNPKP61978 463 aaKnown RBP eCLIP15.03■□□□□ -0
UPF1-202ENST00000594243 BNIP3Q12983 259 aa15.03■□□□□ -0
UPF1-202ENST00000594243 FZD2Q14332 565 aa15.03■□□□□ -0
UPF1-202ENST00000594243 GALNT3Q14435 633 aa15.03■□□□□ -0
UPF1-202ENST00000594243 ESRP1Q6NXG1 681 aaKnown RBP15.03■□□□□ -0
UPF1-202ENST00000594243 PNCKQ6P2M8 343 aa15.03■□□□□ -0
UPF1-202ENST00000594243 Q6ZVL8 140 aa15.03■□□□□ -0
UPF1-202ENST00000594243 HSD11B1LQ7Z5J1 315 aa15.03■□□□□ -0
UPF1-202ENST00000594243 TECPR1Q7Z6L1 1165 aa15.03■□□□□ -0
UPF1-202ENST00000594243 NLRP8Q86W28 1048 aa15.03■□□□□ -0
UPF1-202ENST00000594243 ATL2Q8NHH9 583 aa15.03■□□□□ -0
UPF1-202ENST00000594243 SLC35B2Q8TB61 432 aa15.03■□□□□ -0
UPF1-202ENST00000594243 BTN2A2Q8WVV5 523 aa15.03■□□□□ -0
UPF1-202ENST00000594243 DTD2Q96FN9 168 aa15.03■□□□□ -0
UPF1-202ENST00000594243 GBA3Q9H227 469 aa15.03■□□□□ -0
UPF1-202ENST00000594243 MAGEE1Q9HCI5 957 aa15.03■□□□□ -0
UPF1-202ENST00000594243 DNAJC28Q9NX36 388 aa15.03■□□□□ -0
UPF1-202ENST00000594243 C1orf232A0A0U1RR37 186 aa15.02■□□□□ -0
UPF1-202ENST00000594243 TCRBV7S2A1N4TA0A589 114 aa15.02■□□□□ -0
UPF1-202ENST00000594243 GOLGA8CPA6NN73 597 aa15.02■□□□□ -0
UPF1-202ENST00000594243 PDE2AO00408 941 aaPredicted RBP15.02■□□□□ -0
UPF1-202ENST00000594243 HOXC4P09017 264 aaPredicted RBP15.02■□□□□ -0
UPF1-202ENST00000594243 TSHRP16473 764 aa15.02■□□□□ -0
UPF1-202ENST00000594243 KCNA4P22459 653 aa15.02■□□□□ -0
UPF1-202ENST00000594243 TRIM23P36406 574 aa15.02■□□□□ -0
UPF1-202ENST00000594243 ETV3P41162 512 aa15.02■□□□□ -0
UPF1-202ENST00000594243 GEMP55040 296 aa15.02■□□□□ -0
UPF1-202ENST00000594243 WNT3AP56704 352 aa15.02■□□□□ -0
UPF1-202ENST00000594243 DPTQ07507 201 aa15.02■□□□□ -0
UPF1-202ENST00000594243 CCDC173Q0VFZ6 552 aa15.02■□□□□ -0
UPF1-202ENST00000594243 PSAPL1Q6NUJ1 521 aa15.02■□□□□ -0
UPF1-202ENST00000594243 KDELC1Q6UW63 502 aa15.02■□□□□ -0
UPF1-202ENST00000594243 MACC1Q6ZN28 852 aa15.02■□□□□ -0
UPF1-202ENST00000594243 GATAD2AQ86YP4 633 aa15.02■□□□□ -0
UPF1-202ENST00000594243 NRSN1Q8IZ57 195 aa15.02■□□□□ -0
UPF1-202ENST00000594243 PLA2G15Q8NCC3 412 aa15.02■□□□□ -0
UPF1-202ENST00000594243 LRRC45Q96CN5 670 aa15.02■□□□□ -0
UPF1-202ENST00000594243 SPATA13Q96N96 652 aa15.02■□□□□ -0
UPF1-202ENST00000594243 CAMK1GQ96NX5 476 aa15.02■□□□□ -0
UPF1-202ENST00000594243 SMIM14Q96QK8 99 aa15.02■□□□□ -0
UPF1-202ENST00000594243 CDC6Q99741 560 aa15.02■□□□□ -0
UPF1-202ENST00000594243 FSD1LQ9BXM9 530 aa15.02■□□□□ -0
UPF1-202ENST00000594243 ZFYVE1Q9HBF4 777 aa15.02■□□□□ -0
UPF1-202ENST00000594243 TRMT1Q9NXH9 659 aaKnown RBP15.02■□□□□ -0
UPF1-202ENST00000594243 PKD2L2Q9NZM6 624 aa15.02■□□□□ -0
UPF1-202ENST00000594243 PCOLCE2Q9UKZ9 415 aa15.02■□□□□ -0
UPF1-202ENST00000594243 R3HDM2Q9Y2K5 976 aaKnown RBP15.02■□□□□ -0
UPF1-202ENST00000594243 OR1A2Q9Y585 309 aa15.02■□□□□ -0
UPF1-202ENST00000594243 RGSL1A5PLK6 1076 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 GOLGA6CA6NDK9 693 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 GOLGA6BA6NDN3 693 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 NEMP2A6NFY4 417 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 CACNB4O00305 520 aaPredicted RBP15.01□□□□□ -0.01
UPF1-202ENST00000594243 KIF5CO60282 957 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 CBFA2T3O75081 653 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 GCATO75600 419 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 PYGLP06737 847 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 GOLGA6DP0CG33 693 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 NME1P15531 152 aaKnown RBP15.01□□□□□ -0.01
UPF1-202ENST00000594243 HLA-DPA1P20036 260 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 KELP23276 732 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 BLKP51451 505 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 STC1P52823 247 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 NFATC4Q14934 902 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 TRIP6Q15654 476 aaKnown RBP15.01□□□□□ -0.01
UPF1-202ENST00000594243 CDKN3Q16667 212 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 HS1BP3Q53T59 392 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 ZNF542PQ5EBM4 170 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 ZNF569Q5MCW4 686 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 ENPP7Q6UWV6 458 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 ZNF765Q7L2R6 523 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 FAM71DQ8N9W8 422 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 IPMKQ8NFU5 416 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 CCDC110Q8TBZ0 833 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 AP2M1Q96CW1 435 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 OXNAD1Q96HP4 312 aaPredicted RBP15.01□□□□□ -0.01
UPF1-202ENST00000594243 MRGPRX2Q96LB1 330 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 TMEM121Q9BTD3 319 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 GOLGA6AQ9NYA3 693 aa15.01□□□□□ -0.01
UPF1-202ENST00000594243 ZKSCAN5Q9Y2L8 839 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms