RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DTD2Q96FN9 168 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 PPP1R2P1Q96PQ5 205 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 FAM118BQ9BPY3 351 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 MLPHQ9BV36 600 aaPredicted RBP11.91□□□□□ -0.5
LIG3-213ENST00000590630 TLR10Q9BXR5 811 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 GBA3Q9H227 469 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 USP29Q9HBJ7 922 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 RSPH14Q9UHP6 348 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 NCOR2Q9Y618 2525 aa11.91□□□□□ -0.5
LIG3-213ENST00000590630 SCN8AQ9UQD0 1980 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 C1orf232A0A0U1RR37 186 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 TCRBV7S2A1N4TA0A589 114 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 PMPCBO75439 489 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ANXA9O76027 345 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 NDST3O95803 873 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 EPOP01588 193 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 CSF2P04141 144 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 PCCBP05166 539 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ITGAVP06756 1048 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 NME1P15531 152 aaKnown RBP11.9□□□□□ -0.5
LIG3-213ENST00000590630 HTR1BP28222 390 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 TRIM23P36406 574 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ETV3P41162 512 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 HNRNPKP61978 463 aaKnown RBP eCLIP11.9□□□□□ -0.5
LIG3-213ENST00000590630 PTSQ03393 145 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 DPTQ07507 201 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 MPP3Q13368 585 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 GALNT3Q14435 633 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 PTPRRQ15256 657 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ANKRD20A2Q5SQ80 823 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 FAM182AQ5T1J6 154 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ANKRD20A1Q5TYW2 823 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ANKRD20A3Q5VUR7 823 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 DENND2CQ68D51 928 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 HSD11B1LQ7Z5J1 315 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 SLC13A5Q86YT5 568 aaPredicted RBP11.9□□□□□ -0.5
LIG3-213ENST00000590630 DEFB124Q8NES8 71 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 ATL2Q8NHH9 583 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 SLC35B2Q8TB61 432 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 SPATA13Q96N96 652 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 SRPK1Q96SB4 655 aaKnown RBP11.9□□□□□ -0.5
LIG3-213ENST00000590630 C10orf88Q9H8K7 445 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 MAGEE1Q9HCI5 957 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 DNAJC28Q9NX36 388 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 UBP1Q9NZI7 540 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 PCOLCE2Q9UKZ9 415 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 R3HDM2Q9Y2K5 976 aaKnown RBP11.9□□□□□ -0.5
LIG3-213ENST00000590630 JRKLQ9Y4A0 524 aa11.9□□□□□ -0.5
LIG3-213ENST00000590630 LOC285095A0A1B0GVY8 99 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 C5orf60A6NFR6 353 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 H3BM21 787 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 CBFA2T3O75081 653 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 HOXC4P09017 264 aaPredicted RBP11.89□□□□□ -0.51
LIG3-213ENST00000590630 TSHRP16473 764 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 MSNP26038 577 aaKnown RBP11.89□□□□□ -0.51
LIG3-213ENST00000590630 TEAD1P28347 426 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 STC1P52823 247 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 GEMP55040 296 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 WNT3AP56704 352 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 NFATC4Q14934 902 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 PNCKQ6P2M8 343 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 KDELC1Q6UW63 502 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 KDM7AQ6ZMT4 941 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 Q6ZVL8 140 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 ZNF765Q7L2R6 523 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 KDELC2Q7Z4H8 507 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 TECPR1Q7Z6L1 1165 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 GATAD2AQ86YP4 633 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 REXO1L1PQ8IX06 675 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 NRSN1Q8IZ57 195 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 PLA2G15Q8NCC3 412 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 BAHD1Q8TBE0 780 aaPredicted RBP11.89□□□□□ -0.51
LIG3-213ENST00000590630 CCHCR1Q8TD31 782 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 RHBDD1Q8TEB9 315 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 OXNAD1Q96HP4 312 aaPredicted RBP11.89□□□□□ -0.51
LIG3-213ENST00000590630 SMIM14Q96QK8 99 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 CDC6Q99741 560 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 APOOQ9BUR5 198 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 FSD1LQ9BXM9 530 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 WDR26Q9H7D7 661 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 ZKSCAN5Q9Y2L8 839 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 AAR2Q9Y312 384 aaKnown RBP11.89□□□□□ -0.51
LIG3-213ENST00000590630 OR1A2Q9Y585 309 aa11.89□□□□□ -0.51
LIG3-213ENST00000590630 A0A0U1RQS6 177 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 RGSL1A5PLK6 1076 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 NEMP2A6NFY4 417 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 GOLGA8CPA6NN73 597 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CACNB4O00305 520 aaPredicted RBP11.88□□□□□ -0.51
LIG3-213ENST00000590630 PDE2AO00408 941 aaPredicted RBP11.88□□□□□ -0.51
LIG3-213ENST00000590630 GIPC1O14908 333 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 LIASO43766 372 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 KIF5CO60282 957 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 GCATO75600 419 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 PIAS2O75928 621 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CLDN7O95471 211 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 PYGLP06737 847 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 C1SP09871 688 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 HLA-DPA1P20036 260 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 KCNA4P22459 653 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 KELP23276 732 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms