RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	PPIL1	Q9Y3C6	166 aa		13.34	□□□□□ -0.27
SREBF1-223	ENST00000584760	TTLL3	Q9Y4R7	772 aa		13.34	□□□□□ -0.27
SREBF1-223	ENST00000584760	CSNK1G3	Q9Y6M4	447 aa		13.34	□□□□□ -0.27
SREBF1-223	ENST00000584760	ASH1L	Q9NR48	2969 aa	Known RBP	13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	LY6G6E	A0A0G2JKS1	128 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	NEMP2	A6NFY4	417 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760		K7ESM1	405 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	SCAMP1	O15126	338 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	NEBL	O76041	1014 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	ZFX	P17010	805 aa	Predicted RBP	13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	CES1	P23141	567 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	ACP1	P24666	158 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	NFKBIA	P25963	317 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	ITK	Q08881	620 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	CCDC173	Q0VFZ6	552 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	PDK1	Q15118	436 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	PTPRR	Q15256	657 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	ESRP1	Q6NXG1	681 aa	Known RBP	13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	SPOCD1	Q6ZMY3	1216 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	USP45	Q70EL2	814 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	RFX6	Q8HWS3	928 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	KATNAL2	Q8IYT4	538 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	PELI3	Q8N2H9	469 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	CBARP	Q8N350	705 aa	Predicted RBP	13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	CNTD1	Q8N815	330 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	CCNY	Q8ND76	341 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	KRT35	Q92764	455 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	FGF11	Q92914	225 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	SCRN2	Q96FV2	425 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	APOO	Q9BUR5	198 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	LRRC61	Q9BV99	259 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	MAK16	Q9BXY0	300 aa	Known RBP	13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	APOBEC3B	Q9UH17	382 aa	Known RBP	13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	OR1A2	Q9Y585	309 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760		U3KQA8	63 aa		13.33	□□□□□ -0.28
SREBF1-223	ENST00000584760	ZFC3H1	O60293	1989 aa	Known RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760		A0A0J9YYE9	177 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	BTNL10	A8MVZ5	291 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	PSMD11	O00231	422 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	PPP1R12A	O14974	1030 aa	Predicted RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	AQP9	O43315	295 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	BRINP1	O60477	761 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	IPO7	O95373	1038 aa	Known RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	JCHAIN	P01591	159 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	TRBC1	P01850	177 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	MMP2	P08253	660 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ALPI	P09923	528 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ALPPL2	P10696	532 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	CYP2A6	P11509	494 aa	Predicted RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	CKMT1A	P12532	417 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	KRT10	P13645	584 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	PECAM1	P16284	738 aa	Predicted RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	CTPS1	P17812	591 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	KIAA1024L	P59773	190 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	DYNLT1	P63172	113 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	CXADR	P78310	365 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	CFHR1	Q03591	330 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ADCY2	Q08462	1091 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ILK	Q13418	452 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ACOX1	Q15067	660 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ALG11	Q2TAA5	492 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ODF2	Q5BJF6	829 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	PRRT3	Q5FWE3	981 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	KCTD16	Q68DU8	428 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	NYAP1	Q6ZVC0	841 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	HSD11B1L	Q7Z5J1	315 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	TSPAN33	Q86UF1	283 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	FAM181A	Q8N9Y4	354 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	ACRBP	Q8NEB7	543 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	SNIP1	Q8TAD8	396 aa	Known RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	BTN2A2	Q8WVV5	523 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	FUBP1	Q96AE4	644 aa	Known RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	NUS1	Q96E22	293 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	DTD2	Q96FN9	168 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	APOLD1	Q96LR9	279 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	SMIM14	Q96QK8	99 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	BAG1	Q99933	345 aa	Predicted RBP	13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	DUSP23	Q9BVJ7	150 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	LACRT	Q9GZZ8	138 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	IMPACT	Q9P2X3	320 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	SPAST	Q9UBP0	616 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	DUSP10	Q9Y6W6	482 aa		13.32	□□□□□ -0.28
SREBF1-223	ENST00000584760	RP1	P56715	2156 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	KNTC1	P50748	2209 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	hCG_1818297	A0A087WSY0	165 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	TEX51	A0A1B0GUA7	166 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	CAPN8	A6NHC0	703 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	TPP1	O14773	563 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	PJA2	O43164	708 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	CST8	O60676	142 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	GCAT	O75600	419 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	PRL	P01236	227 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	HTR1B	P28222	390 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	CTNNA1	P35221	906 aa	Known RBP	13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	TRIM23	P36406	574 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	NR2C2	P49116	596 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	VAV2	P52735	878 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	HK3	P52790	923 aa		13.31	□□□□□ -0.28
SREBF1-223	ENST00000584760	PPARD	Q03181	441 aa		13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms