RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 LCTLQ6UWM7 567 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 LINGO2Q7L985 606 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 SZRD1Q7Z422 152 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 NR2C2APQ86WQ0 139 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 TDRPQ86YL5 185 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 SRBD1Q8N5C6 995 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 SCCPDHQ8NBX0 429 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 GABPB2Q8TAK5 448 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 MOAP1Q96BY2 351 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 MSI2Q96DH6 328 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 CALML4Q96GE6 196 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 C1orf74Q96LT6 269 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 HARBI1Q96MB7 349 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 GFM1Q96RP9 751 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 FTOQ9C0B1 505 aaKnown RBP eCLIP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 CATSPERBQ9H7T0 1116 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 KIF9Q9HAQ2 790 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 KRCC1Q9NPI7 259 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 CLIC5Q9NZA1 410 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 ADD3Q9UEY8 706 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 ZNF215Q9UL58 517 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 SNX8Q9Y5X2 465 aa3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 RSF1Q96T23 1441 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-209ENST00000583441 TTC3P53804 2025 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 hCG_1807616A0A1W2PRN6 198 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 FRMD3A2A2Y4 597 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 CDRT15L2A8MXV6 281 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 B4DGG1 531 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 LINC01565O15544 149 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 KLK8O60259 260 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 EIF5BO60841 1220 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 DAB1O75553 588 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 SYF2O95926 243 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 TOMM40O96008 361 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 ACTN1P12814 892 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 PORP16435 677 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 DDX5P17844 614 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 EDN2P20800 178 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 MCM3P25205 808 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 RAD52P43351 418 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 KCNJ4P48050 445 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 PPP3CCP48454 512 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 ENTPD1P49961 510 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 F2RL1P55085 397 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 CDH8P55286 799 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 TMPRSS3P57727 454 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 ZP1P60852 638 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 ZXDBP98169 803 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 CEBPZQ03701 1054 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 LRMPQ12912 555 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 GRIK3Q13003 919 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 CAPSQ13938 189 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 PCGF3Q3KNV8 242 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 SOWAHCQ53LP3 525 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 CFAP58Q5T655 872 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 JADE1Q6IE81 842 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 LRRC8EQ6NSJ5 796 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 GLDNQ6ZMI3 551 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 SLC16A12Q6ZSM3 486 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 GPSM1Q86YR5 675 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 RNF168Q8IYW5 571 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 TAGAPQ8N103 731 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 MMP21Q8N119 569 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 PARP16Q8N5Y8 322 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 PABPC5Q96DU9 382 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 NLRP4Q96MN2 994 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 NEUROD6Q96NK8 337 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 FAM110AQ9BQ89 295 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 TMEM47Q9BQJ4 181 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 MMTAG2Q9BU76 263 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 IFIH1Q9BYX4 1025 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 NPFFR1Q9GZQ6 430 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 FAM234AQ9H0X4 552 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 POLR1BQ9H9Y6 1135 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 CYSLTR2Q9NS75 346 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 POLG2Q9UHN1 485 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 COG5Q9UP83 839 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 ERVK-11Q9UQG0 969 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 LSM4Q9Y4Z0 139 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 MAU2Q9Y6X3 613 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 PASKQ96RG2 1323 aa3.83□□□□□ -1.8
SMCHD1-209ENST00000583441 ZNF644Q9H582 1327 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 MS4A18H0YCH9 400 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 SNAP23O00161 211 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 AHCYL1O43865 530 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 CAMTA2O94983 1202 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 NDUFB8O95169 186 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 EPN2O95208 641 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 STARD3NLO95772 234 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 RB1P06400 928 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 CYP19A1P11511 503 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 RARGP13631 454 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 ARSBP15848 533 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 ITGAXP20702 1163 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 GNLYP22749 145 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 SHMT1P34896 483 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 HADHAP40939 763 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 UBA7P41226 1012 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 PIK3CAP42336 1068 aa3.82□□□□□ -1.8
SMCHD1-209ENST00000583441 SNX16P57768 344 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms