RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 RBL1P28749 1068 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 THOP1P52888 689 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 RPL26P61254 145 aaKnown RBP20.13■□□□□ 0.81
SS18-218ENST00000581021 PTSQ03393 145 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 FOXC1Q12948 553 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 NFATC4Q14934 902 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 ESRP1Q6NXG1 681 aaKnown RBP20.13■□□□□ 0.81
SS18-218ENST00000581021 TECPR1Q7Z6L1 1165 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 ZNF548Q8NEK5 533 aaPredicted RBP20.13■□□□□ 0.81
SS18-218ENST00000581021 HTR3CQ8WXA8 447 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 NUS1Q96E22 293 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 CDC6Q99741 560 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 GORASP1Q9BQQ3 440 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 LGR4Q9BXB1 951 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 TSGA10Q9BZW7 698 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 LZTFL1Q9NQ48 299 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 HAUS2Q9NVX0 235 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 UBP1Q9NZI7 540 aa20.13■□□□□ 0.81
SS18-218ENST00000581021 RPL26L1Q9UNX3 145 aaKnown RBP20.13■□□□□ 0.81
SS18-218ENST00000581021 TDRD6O60522 2096 aaKnown RBP20.12■□□□□ 0.81
SS18-218ENST00000581021 LRP4O75096 1905 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 AKAP13Q12802 2813 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 HACD1B0YJ81 288 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 FFAR2O15552 330 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 SOD1P00441 154 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 CELA2BP08218 269 aaPredicted RBP20.12■□□□□ 0.81
SS18-218ENST00000581021 CCDC175P0C221 793 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 STC1P52823 247 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 EPHB1P54762 984 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 DNAJC3Q13217 504 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 KLF1Q13351 362 aaPredicted RBP20.12■□□□□ 0.81
SS18-218ENST00000581021 XRCC4Q13426 336 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 PCSK7Q16549 785 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 ALG11Q2TAA5 492 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 KDELC1Q6UW63 502 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 ZNF662Q6ZS27 426 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 KDELC2Q7Z4H8 507 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 UBL4BQ8N7F7 174 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 EID2BQ96D98 161 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 OXNAD1Q96HP4 312 aaPredicted RBP20.12■□□□□ 0.81
SS18-218ENST00000581021 LYSMD1Q96S90 227 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 FTSJ1Q9UET6 329 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 CD84Q9UIB8 345 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 R3HDM2Q9Y2K5 976 aaKnown RBP20.12■□□□□ 0.81
SS18-218ENST00000581021 FRYQ5TBA9 3013 aa20.12■□□□□ 0.81
SS18-218ENST00000581021 TMEM202A6NGA9 273 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 H7C0C1 242 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 PSMD11O00231 422 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 TOR1BO14657 336 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 SIGLEC6O43699 453 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 KRT86O43790 486 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 HYAL3O43820 417 aaPredicted RBP20.11■□□□□ 0.81
SS18-218ENST00000581021 PMPCBO75439 489 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 GCATO75600 419 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 JUNDP17535 347 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 CA4P22748 312 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 TRIM23P36406 574 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 ATP5OP48047 213 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 SLC14A2Q15849 920 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 PROX2Q3B8N5 592 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 INAVAQ3KP66 663 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 CCDC181Q5TID7 509 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 PNCKQ6P2M8 343 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 PHACTR4Q8IZ21 702 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 TSACCQ96A04 125 aaPredicted RBP20.11■□□□□ 0.81
SS18-218ENST00000581021 PDXPQ96GD0 296 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 CNDP2Q96KP4 475 aaKnown RBP20.11■□□□□ 0.81
SS18-218ENST00000581021 LRRC61Q9BV99 259 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 FGF22Q9HCT0 170 aa20.11■□□□□ 0.81
SS18-218ENST00000581021 KLHL8Q9P2G9 620 aaPredicted RBP20.11■□□□□ 0.81
SS18-218ENST00000581021 LY6G6EA0A0G2JKS1 128 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 ANKRD66B4E2M5 251 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 SCAMP1O15126 338 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 MTSS1O43312 755 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 TNFSF14O43557 240 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 TJP3O95049 919 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 CLDN7O95471 211 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 PIRTP0C851 137 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 MYF5P13349 255 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 KIAA1024LP59773 190 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 EIF3EP60228 445 aaKnown RBP20.1■□□□□ 0.81
SS18-218ENST00000581021 HNRNPKP61978 463 aaKnown RBP eCLIP20.1■□□□□ 0.81
SS18-218ENST00000581021 ARHGEF7Q14155 803 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 PTK2BQ14289 1009 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 RAB44Q7Z6P3 723 aaPredicted RBP20.1■□□□□ 0.81
SS18-218ENST00000581021 OR4C6Q8NH72 309 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 PTCD2Q8WV60 388 aaKnown RBP20.1■□□□□ 0.81
SS18-218ENST00000581021 OR1E3Q8WZA6 343 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 SCAMP4Q969E2 229 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 AGAP2Q99490 1192 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 CLPBQ9H078 707 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 ABCG8Q9H221 673 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 PPP2R2CQ9Y2T4 447 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 U3KQA8 63 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 ASPMQ8IZT6 3477 aa20.1■□□□□ 0.81
SS18-218ENST00000581021 ENC1O14682 589 aa20.09■□□□□ 0.81
SS18-218ENST00000581021 RBP3P10745 1247 aa20.09■□□□□ 0.81
SS18-218ENST00000581021 SHC2P98077 582 aa20.09■□□□□ 0.81
SS18-218ENST00000581021 CDK18Q07002 472 aa20.09■□□□□ 0.81
SS18-218ENST00000581021 C1orf61Q13536 156 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms