RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLC39A10Q9ULF5 831 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 RPL26L1Q9UNX3 145 aaKnown RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 TNRC18O15417 2968 aaPredicted RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 ANKRD12Q6UB98 2062 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 A0A0J9YYE9 177 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 A0A0U1RQS6 177 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 ERICH4A6NGS2 130 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 OTOL1A6NHN0 477 aaPredicted RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 TTC34A8MYJ7 566 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 NDUFAB1O14561 156 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 STX7O15400 261 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 CD3EAPO15446 510 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 HRO43593 1189 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 GLRA3O75311 464 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 HAUS5O94927 633 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 POP4O95707 220 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 FAM107AO95990 144 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 TRBC1P01850 177 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 ASLP04424 464 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 SRPRAP08240 638 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 DHRS4L1P0CG22 281 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 PRSS56P0CW18 603 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 SAT1P21673 171 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 PSMA3P25788 255 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 MTHFRP42898 656 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 ETV4P43268 484 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 LEPRP48357 1165 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 CCT5P48643 541 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 CLCN5P51795 746 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 RAD51Q06609 339 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 SEMA3AQ14563 771 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 USP10Q14694 798 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 RBM20Q5T481 1227 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 N4BP2L1Q5TBK1 243 aaPredicted RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 CNSTQ6PJW8 725 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 LYSMD3Q7Z3D4 306 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 ZSWIM9Q86XI8 627 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 CILP2Q8IUL8 1156 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 LMNTD2Q8IXW0 634 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 CPA6Q8N4T0 437 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 GPATCH11Q8N954 259 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 GPR150Q8NGU9 434 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 OR4L1Q8NH43 312 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 TTC8Q8TAM2 541 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 ZNF473Q8WTR7 871 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 NXPE3Q969Y0 559 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 E2F7Q96AV8 911 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 VOPP1Q96AW1 172 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 ELMO2Q96JJ3 720 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 CABS1Q96KC9 395 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 RIPOR3Q96MK2 946 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 TUBGCP5Q96RT8 1024 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 CPEB1Q9BZB8 566 aaKnown RBP10.53□□□□□ -0.72
SS18-217ENST00000580958 GPR63Q9BZJ6 419 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 MTG2Q9H4K7 406 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 SUV39H2Q9H5I1 410 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 BPIFA1Q9NP55 256 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 LMCD1Q9NZU5 365 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 DEC1Q9P2X7 70 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 FKBPLQ9UIM3 349 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 SLC27A6Q9Y2P4 619 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 PLLPQ9Y342 182 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 TRIOBPQ9H2D6 2365 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 PLXNA2O75051 1894 aa10.53□□□□□ -0.72
SS18-217ENST00000580958 CKAP5Q14008 2032 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 A0A096LPK6 155 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 CAPN8A6NHC0 703 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 WASH3PC4AMC7 463 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PHGDHO43175 533 aaKnown RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 S1PR4O95977 384 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 UGT2B4P06133 528 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 ATP5BP06576 529 aaKnown RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 C2P06681 752 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 DLDP09622 509 aaKnown RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 OGNP20774 298 aaKnown RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 MC4RP32245 332 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 HNF1BP35680 557 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 LTBRP36941 435 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 NNMTP40261 264 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 HADHAP40939 763 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 RECQLP46063 649 aaPredicted RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 SERPINB4P48594 390 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 POLD2P49005 469 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PGGT1BP53609 377 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 IRX4P78413 519 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 IRF9Q00978 393 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 FCHO2Q0JRZ9 810 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 MESP2Q0VG99 397 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 RUNX3Q13761 415 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 ZKSCAN8Q15776 578 aaPredicted RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 PDK4Q16654 411 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PTPRNQ16849 979 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 CTC1Q2NKJ3 1217 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 FASTKD1Q53R41 847 aaKnown RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 MRNIPQ6NTE8 343 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 AFTPHQ6ULP2 937 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PARM1Q6UWI2 310 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 CPLX4Q7Z7G2 160 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 GALNT7Q86SF2 657 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PLD6Q8N2A8 252 aaKnown RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms