RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FBXL21Q9UKT6 434 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 CKAP5Q14008 2032 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 C2orf81A6NN90 581 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 NPC1O15118 1278 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 GPR39O43194 453 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 ACVR1Q04771 509 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 TTMPQ5BVD1 217 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 KIAA0930Q6ICG6 404 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-207ENST00000580002 CYS1Q717R9 158 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 SIX5Q8N196 739 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 AADATQ8N5Z0 425 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 OR6P1Q8NGX9 317 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 ASB2Q96Q27 587 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 LYSMD1Q96S90 227 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 DHRS4Q9BTZ2 278 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 TMBIM4Q9HC24 238 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 EURLQ9NYK6 297 aa25.12■■□□□ 1.61
SHMT1-207ENST00000580002 MARCH4Q9P2E8 410 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-207ENST00000580002 MAN2B1O00754 1011 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 TCEA3O75764 348 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 GOT2P00505 430 aaKnown RBP25.11■■□□□ 1.61
SHMT1-207ENST00000580002 ITGB7P26010 798 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 CA5AP35218 305 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 DRD3P35462 400 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 CDKN1CP49918 316 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-207ENST00000580002 RPS14P62263 151 aaKnown RBP25.11■■□□□ 1.61
SHMT1-207ENST00000580002 CNTN1Q12860 1018 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 CTBP1Q13363 440 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 SDE2Q6IQ49 451 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 USP45Q70EL2 814 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 FLCNQ8NFG4 579 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 CCDC77Q9BR77 488 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 LMAN1LQ9HAT1 526 aa25.11■■□□□ 1.61
SHMT1-207ENST00000580002 BCCIPQ9P287 314 aaKnown RBP eCLIP25.11■■□□□ 1.61
SHMT1-207ENST00000580002 STX7O15400 261 aaKnown RBP25.1■■□□□ 1.61
SHMT1-207ENST00000580002 RPP40O75818 363 aaKnown RBP25.1■■□□□ 1.61
SHMT1-207ENST00000580002 C1SP09871 688 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 POLR2LP62875 67 aaKnown RBP25.1■■□□□ 1.61
SHMT1-207ENST00000580002 RALGDSQ12967 914 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 GAS6Q14393 721 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 CST6Q15828 149 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 KLHL38Q2WGJ6 581 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 KCTD16Q68DU8 428 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 KCNV2Q8TDN2 545 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 SLC44A1Q8WWI5 657 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 MSANTD3Q96H12 275 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 FAM96AQ9H5X1 160 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 HACD3Q9P035 362 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 WNT16Q9UBV4 365 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 HMGCLP35914 325 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 P2RY2P41231 377 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 FRG1Q14331 258 aaKnown RBP25.1■■□□□ 1.61
SHMT1-207ENST00000580002 SEMA3AQ14563 771 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 UBXN2BQ14CS0 331 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 NLRP9Q7RTR0 991 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 SPNS2Q8IVW8 549 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 OR2T3Q8NH03 318 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 ROPN1BQ9BZX4 212 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-207ENST00000580002 ROPN1Q9HAT0 212 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-207ENST00000580002 CD93Q9NPY3 652 aa25.1■■□□□ 1.61
SHMT1-207ENST00000580002 XPAP23025 273 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-207ENST00000580002 PSMA3P25788 255 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 GABRB3P28472 473 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 MSH2P43246 934 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 MPP1Q00013 466 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 PEX6Q13608 980 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 FBXO43Q4G163 708 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 ZNF789Q5FWF6 425 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 PDPK2PQ6A1A2 396 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 FBXL19Q6PCT2 694 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 HSD11B1LQ7Z5J1 315 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 LRRC6Q86X45 466 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 HCAR2Q8TDS4 363 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 TRABDQ9H4I3 376 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 ZFATQ9P243 1243 aa25.09■■□□□ 1.61
SHMT1-207ENST00000580002 A0A1W2PQ67 120 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 GAPDHSO14556 408 aaPredicted RBP25.08■■□□□ 1.61
SHMT1-207ENST00000580002 ADRB3P13945 408 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 BPIP17213 487 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 VIPR1P32241 457 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 PRAMEP78395 509 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 XIAPP98170 497 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 PPARDQ03181 441 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 PRKCQQ04759 706 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 TMED2Q15363 201 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 NEPROQ6NW34 567 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 ADGRD1Q6QNK2 874 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 ERN2Q76MJ5 926 aaKnown RBP25.08■■□□□ 1.61
SHMT1-207ENST00000580002 DSG4Q86SJ6 1040 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 TMPRSS6Q8IU80 811 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 GPR26Q8NDV2 337 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 ATXN2LQ8WWM7 1075 aaKnown RBP25.08■■□□□ 1.61
SHMT1-207ENST00000580002 WRAP53Q9BUR4 548 aaKnown RBP25.08■■□□□ 1.61
SHMT1-207ENST00000580002 LTB4R2Q9NPC1 389 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 CD84Q9UIB8 345 aa25.08■■□□□ 1.61
SHMT1-207ENST00000580002 A0A1W2PP55 124 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 HMX2A2RU54 273 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 FAM170BA6NMN3 283 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 C1QTNF3-AMACRE9PGA6 284 aa25.08■■□□□ 1.6
SHMT1-207ENST00000580002 MYZAPP0CAP1 466 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms